2OSN

An alternate description of a crystal structure of phospholipase A2 from Bungarus caeruleus


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.3948.52

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 57.104α = 89.75
b = 57.104β = 89.75
c = 57.104γ = 89.75
Symmetry
Space GroupR 3 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray MSINGLE WAVELENGTH

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONtransformed from 1G2XTHROUGHOUTThe A chain of PDB entry 1G2X.2.5304549444120399.640.2170.2160.2130.288RANDOM18.95
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.1-0.1-0.1
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg44.915
r_dihedral_angle_4_deg19.578
r_dihedral_angle_3_deg17.374
r_dihedral_angle_1_deg5.571
r_scangle_it1.584
r_angle_refined_deg1.123
r_scbond_it0.98
r_mcangle_it0.707
r_mcbond_it0.379
r_nbtor_refined0.295
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg44.915
r_dihedral_angle_4_deg19.578
r_dihedral_angle_3_deg17.374
r_dihedral_angle_1_deg5.571
r_scangle_it1.584
r_angle_refined_deg1.123
r_scbond_it0.98
r_mcangle_it0.707
r_mcbond_it0.379
r_nbtor_refined0.295
r_nbd_refined0.195
r_xyhbond_nbd_refined0.191
r_symmetry_hbond_refined0.171
r_symmetry_vdw_refined0.16
r_chiral_restr0.069
r_bond_refined_d0.008
r_gen_planes_refined0.003
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms897
Nucleic Acid Atoms
Solvent Atoms32
Heterogen Atoms3

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction