X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1MICROBATCH92930.1M Bicine, 0.1M sodium chloride, 39-45% PEG 555 MME, pH 9.0, Microbatch, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
3.7667.28

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 113.482α = 90
b = 99.499β = 117.71
c = 72.693γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152007-01-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.2.20.9793ALS8.2.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.325099.90.10618.67.430472-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.322.4399.30.7152.17.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3GI92.325028918155198.650.204050.202540.23274RANDOM38.294
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-3.230.561.392.36
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.041
r_dihedral_angle_4_deg18.913
r_dihedral_angle_3_deg13.902
r_dihedral_angle_1_deg4.62
r_scangle_it1.653
r_scbond_it1.051
r_angle_refined_deg1.049
r_mcangle_it0.718
r_mcbond_it0.427
r_symmetry_vdw_refined0.314
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.041
r_dihedral_angle_4_deg18.913
r_dihedral_angle_3_deg13.902
r_dihedral_angle_1_deg4.62
r_scangle_it1.653
r_scbond_it1.051
r_angle_refined_deg1.049
r_mcangle_it0.718
r_mcbond_it0.427
r_symmetry_vdw_refined0.314
r_nbtor_refined0.305
r_nbd_refined0.191
r_symmetry_hbond_refined0.179
r_xyhbond_nbd_refined0.126
r_chiral_restr0.075
r_bond_refined_d0.009
r_gen_planes_refined0.003
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3344
Nucleic Acid Atoms
Solvent Atoms176
Heterogen Atoms67

Software

Software
Software NamePurpose
PHASERphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling