X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.252980.1 M Tris-HCl, 5 % PEG 4000
Crystal Properties
Matthews coefficientSolvent content
2.3948.45

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 64.486α = 90
b = 137.871β = 101.18
c = 91.779γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELPSI PILATUS 6M2014-07-25MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL12-20.9795SSRLBL12-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.75098.510.73.340139
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.797.61.63.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT2.75040139214697.80.240380.238490.27673RANDOM64.526
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.8-0.15-0.120.91
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.032
r_dihedral_angle_4_deg15.265
r_dihedral_angle_3_deg14.134
r_dihedral_angle_1_deg4.557
r_long_range_B_refined2.283
r_long_range_B_other2.283
r_mcangle_it1.036
r_mcangle_other1.036
r_angle_refined_deg0.852
r_scangle_other0.801
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.032
r_dihedral_angle_4_deg15.265
r_dihedral_angle_3_deg14.134
r_dihedral_angle_1_deg4.557
r_long_range_B_refined2.283
r_long_range_B_other2.283
r_mcangle_it1.036
r_mcangle_other1.036
r_angle_refined_deg0.852
r_scangle_other0.801
r_angle_other_deg0.643
r_mcbond_it0.554
r_mcbond_other0.554
r_scbond_it0.47
r_scbond_other0.47
r_chiral_restr0.046
r_bond_refined_d0.003
r_gen_planes_refined0.003
r_bond_other_d0.002
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms9806
Nucleic Acid Atoms
Solvent Atoms11
Heterogen Atoms10

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing