Navigation Tabs Acoustic injectors for drop-on-demand serial femtosecond crystallography
Serial Crystallography (SX)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3VCP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 295 10 mg/ml protein with 25 mM hexaamine cobalt chloride crystallized by hanging drop with precipitant 7.5% PEG 3350, 10% glycerol, and 0.1M HEPES pH 7.0.
Crystal Properties Matthews coefficient Solvent content 2.71 54.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 98.427 α = 90 b = 98.427 β = 90 c = 180.087 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 295 PIXEL CS-PAD XPP 2013-06-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 FREE ELECTRON LASER SLAC LCLS BEAMLINE XPP 1.36 SLAC LCLS XPP
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 90.04 99.66 16.5 53.6 25584
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.29 99.9 3.7 10.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3vcp 2.2 90.04 25584 1292 99.66 0.27204 0.26908 0.31 0.33012 RANDOM 25.081
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.22 0.11 0.22 -0.72
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.31 r_dihedral_angle_3_deg 19.502 r_dihedral_angle_4_deg 19.033 r_dihedral_angle_1_deg 8.039 r_long_range_B_other 5.338 r_long_range_B_refined 5.333 r_mcangle_it 2.56 r_mcangle_other 2.559 r_scangle_other 2.089 r_angle_refined_deg 1.766
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.31 r_dihedral_angle_3_deg 19.502 r_dihedral_angle_4_deg 19.033 r_dihedral_angle_1_deg 8.039 r_long_range_B_other 5.338 r_long_range_B_refined 5.333 r_mcangle_it 2.56 r_mcangle_other 2.559 r_scangle_other 2.089 r_angle_refined_deg 1.766 r_mcbond_it 1.576 r_mcbond_other 1.575 r_scbond_it 1.277 r_scbond_other 1.277 r_angle_other_deg 0.887 r_chiral_restr 0.093 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d 0.006 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3159 Nucleic Acid Atoms Solvent Atoms 134 Heterogen Atoms 12
Software Software Software Name Purpose REFMAC refinement cctbx.xfel data reduction cctbx.xfel data scaling MOLREP phasing
