5UUB

Tetragonal thermolysin cryocooled to 100 K with 25% xylose/25% mpd as cryoprotectant


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP295Well: 2 M AmSO4 Drop: 50 mg/mL protein in 45% DMSO, 0.5 M ZnCl2
Crystal Properties
Matthews coefficientSolvent content
3.5965.77

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 96.707α = 90
b = 96.707β = 90
c = 105.611γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDOXFORD ONYX CCD2015-08-26MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SEALED TUBEOXFORD DIFFRACTION ENHANCE ULTRA1.54

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.620.999.90.99924.59.412619116.342542611
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.699.80.6886

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONFREE R-VALUE1.6000028828120.89735452151.33439324505126154380299.93741731560.1473124306110.1467395263780.16504942602722.1312377266
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
f_dihedral_angle_d10.294411856
f_angle_d0.992545882565
f_chiral_restr0.0585103885882
f_bond_d0.00832289787231
f_plane_restr0.00650642683684
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2432
Nucleic Acid Atoms
Solvent Atoms360
Heterogen Atoms86

Software

Software
Software NamePurpose
PHENIXrefinement
CrysalisProdata reduction
SCALAdata scaling
PHENIXphasing