5NKO
Solution structure of the C-terminal domain of S. aureus Hibernating Promoting Factor (CTD-SaHPF)
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D 1H-13C NOESY aliphatic | 2.0 mM [U-99% 13C; U-99% 15N] C-terminal domain of SaHPF, 50 mM potassium phosphate, 250 mM NH4Cl | 90% H2O/10% D2O | 250 mM | 7.6 | 1 bar | 308 | Bruker AVANCE III 700 |
2 | 3D 1H-13C NOESY aromatic | 2.0 mM [U-99% 13C; U-99% 15N] C-terminal domain of SaHPF, 50 mM potassium phosphate, 250 mM NH4Cl | 90% H2O/10% D2O | 250 mM | 7.6 | 1 bar | 308 | Bruker AVANCE III 700 |
3 | 3D 1H-15N NOESY | 2.0 mM [U-99% 13C; U-99% 15N] C-terminal domain of SaHPF, 50 mM potassium phosphate, 250 mM NH4Cl | 90% H2O/10% D2O | 250 mM | 7.6 | 1 bar | 308 | Bruker AVANCE III 700 |
4 | 2D 1H-1H NOESY | 2.0 mM [U-99% 13C; U-99% 15N] C-terminal domain of SaHPF, 50 mM potassium phosphate, 250 mM NH4Cl | 90% H2O/10% D2O | 250 mM | 7.6 | 1 bar | 308 | Bruker AVANCE III 700 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III | 700 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | ARIA |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 500 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | chemical shift assignment | ARIA | Linge, O'Donoghue and Nilges | |
4 | peak picking | ARIA | Linge, O'Donoghue and Nilges | |
5 | processing | TopSpin | Bruker Biospin | |
2 | structure calculation | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
6 | data analysis | PROCHECK / PROCHECK-NMR | Laskowski, MacArthur, Smith, Jones, Hutchinson, Morris, Moss and Thornton | |
3 | refinement | CNS | Brunger, Adams, Clore, Gros, Nilges and Read |