6A7J

Testerone bound CYP154C4 from Streptomyces sp. ATCC 11861


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2931 M sodium citrate tribasic and 0.1 M sodium cacodylate:HCl pH 6.5
Crystal Properties
Matthew coefficientSolvent content
3.6966.63

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 90.381α = 90
b = 113.94β = 90
c = 128.361γ = 90
Symmetry
Space GroupI 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray200CCDADSC QUANTUM 315r2017-03-23MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPAL/PLS BEAMLINE 5C (4A)0.9795PAL/PLS5C (4A)

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.75096.50.0831.95.417614
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.72.750.419

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT2.7147.551673787295.280.219230.216670.2659RANDOM85.595
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.070.010.07
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.386
r_dihedral_angle_3_deg18.189
r_dihedral_angle_4_deg13.97
r_long_range_B_refined13.214
r_long_range_B_other13.213
r_mcangle_it9.547
r_mcangle_other9.545
r_scangle_other9.304
r_dihedral_angle_1_deg7.452
r_mcbond_other6.381
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.386
r_dihedral_angle_3_deg18.189
r_dihedral_angle_4_deg13.97
r_long_range_B_refined13.214
r_long_range_B_other13.213
r_mcangle_it9.547
r_mcangle_other9.545
r_scangle_other9.304
r_dihedral_angle_1_deg7.452
r_mcbond_other6.381
r_mcbond_it6.379
r_scbond_it5.962
r_scbond_other5.96
r_angle_refined_deg1.766
r_angle_other_deg1.075
r_chiral_restr0.095
r_bond_refined_d0.013
r_gen_planes_refined0.007
r_gen_planes_other0.005
r_bond_other_d0.002
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_scangle_it
r_metal_ion_refined
r_metal_ion_other
r_sphericity_bonded
r_rigid_bond_restr
r_sphericity_free
r_symmetry_vdw_refined
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3122
Nucleic Acid Atoms
Solvent Atoms8
Heterogen Atoms64

Software

Software
Software NamePurpose
REFMACrefinement
MxDCdata collection
HKL-2000data scaling