6YXC

Structure of Chloroflexus aggregans flavin based fluorescent protein (CagFbFP) Q148R variant


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2950.12M hexanediol, 0.12M butanol, 0.12M 1,2-propanediol, 0.12M propanol, 0.12M butanediol, 0.12M 1,3-propanediol, 0.1M MES, 0.1M Imid, pH 6.5, 20%PEG500, 10% PEG20000
Crystal Properties
Matthews coefficientSolvent content
2.4850.38

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 57.419α = 90
b = 110.169β = 90
c = 38.963γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M-F2018-06-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID23-10.9184ESRFID23-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.63239.7871.7116.76.422625
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.6321.76180.7462.46.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT6rhf1.6539.7820790113871.570.18380.18220.2117RANDOM25.248
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.360.070.29
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.798
r_dihedral_angle_4_deg13.378
r_dihedral_angle_3_deg10.558
r_dihedral_angle_1_deg6.67
r_angle_refined_deg1.218
r_angle_other_deg1.209
r_chiral_restr0.039
r_gen_planes_refined0.004
r_bond_refined_d0.003
r_gen_planes_other0.001
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.798
r_dihedral_angle_4_deg13.378
r_dihedral_angle_3_deg10.558
r_dihedral_angle_1_deg6.67
r_angle_refined_deg1.218
r_angle_other_deg1.209
r_chiral_restr0.039
r_gen_planes_refined0.004
r_bond_refined_d0.003
r_gen_planes_other0.001
r_bond_other_d
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1570
Nucleic Acid Atoms
Solvent Atoms211
Heterogen Atoms63

Software

Software
Software NamePurpose
Aimlessdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
MOLREPphasing