7BQC | pdb_00007bqc

Solution NMR structure of NF4; de novo designed protein with a novel fold


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.45 mM [U-100% 13C; U-100% 15N] NF4, 5.6 mM sodium phosphate, 1.1 mM potassium phosphate, 137 mM sodium chloride95% H2O/5% D2O145.5 mM7.41 atm303Bruker AVANCE III 600
22D 1H-13C HSQC aliphatic0.45 mM [U-100% 13C; U-100% 15N] NF4, 5.6 mM sodium phosphate, 1.1 mM potassium phosphate, 137 mM sodium chloride95% H2O/5% D2O145.5 mM7.41 atm303Bruker AVANCE III 600
32D 1H-13C HSQC aromatic0.45 mM [U-100% 13C; U-100% 15N] NF4, 5.6 mM sodium phosphate, 1.1 mM potassium phosphate, 137 mM sodium chloride95% H2O/5% D2O145.5 mM7.41 atm303Bruker AVANCE III 700
43D HNCO0.45 mM [U-100% 13C; U-100% 15N] NF4, 5.6 mM sodium phosphate, 1.1 mM potassium phosphate, 137 mM sodium chloride95% H2O/5% D2O145.5 mM7.41 atm303Bruker AVANCE III 600
53D HNCACB0.45 mM [U-100% 13C; U-100% 15N] NF4, 5.6 mM sodium phosphate, 1.1 mM potassium phosphate, 137 mM sodium chloride95% H2O/5% D2O145.5 mM7.41 atm303Bruker AVANCE III 600
63D CBCA(CO)NH0.45 mM [U-100% 13C; U-100% 15N] NF4, 5.6 mM sodium phosphate, 1.1 mM potassium phosphate, 137 mM sodium chloride95% H2O/5% D2O145.5 mM7.41 atm303Bruker AVANCE III 600
73D HCCH-TOCSY aliphatic0.45 mM [U-100% 13C; U-100% 15N] NF4, 5.6 mM sodium phosphate, 1.1 mM potassium phosphate, 137 mM sodium chloride95% H2O/5% D2O145.5 mM7.41 atm303Bruker AVANCE III 700
83D 1H-15N NOESY0.45 mM [U-100% 13C; U-100% 15N] NF4, 5.6 mM sodium phosphate, 1.1 mM potassium phosphate, 137 mM sodium chloride95% H2O/5% D2O145.5 mM7.41 atm303Bruker AVANCE III 700
93D 1H-13C NOESY aliphatic0.45 mM [U-100% 13C; U-100% 15N] NF4, 5.6 mM sodium phosphate, 1.1 mM potassium phosphate, 137 mM sodium chloride95% H2O/5% D2O145.5 mM7.41 atm303Bruker AVANCE III 700
103D 1H-13C NOESY aromatic0.45 mM [U-100% 13C; U-100% 15N] NF4, 5.6 mM sodium phosphate, 1.1 mM potassium phosphate, 137 mM sodium chloride95% H2O/5% D2O145.5 mM7.41 atm303Bruker AVANCE III 700
112D 1H-15N HSQC IPAP0.45 mM [U-100% 13C; U-100% 15N] NF4, 5.6 mM sodium phosphate, 1.1 mM potassium phosphate, 137 mM sodium chloride95% H2O/5% D2O145.5 mM7.41 atm303Bruker AVANCE III 700
122D 1H-15N HSQC IPAP0.2 mM [U-100% 13C; U-100% 15N] NF4, 5.6 mM sodium phosphate, 1.1 mM potassium phosphate, 137 mM sodium chloride, 10 mg/mL Pf1 phage95% H2O/5% D2O145.5 mM7.41 atm303Bruker AVANCE III 700
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III600
2BrukerAVANCE III700
NMR Refinement
MethodDetailsSoftware
molecular dynamicsAmber
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Representative Model1 (target function)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTopSpin3.2Bruker Biospin
2processingNMRPipe2017Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3peak pickingMAGRO2.01.38Kobayashi, N.
4data analysisNMRViewJohnson, One Moon Scientific
5chemical shift assignmentCYANA3.98Guntert, Mumenthaler and Wuthrich
6data analysisTALOS2017Cornilescu, Delaglio and Bax
7structure calculationCYANA3.98Guntert, Mumenthaler and Wuthrich
8refinementAmber12Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
10processingqMDD2.6Orekhov, V. Jaravine, M. Mayzel, K. Kazimierczuk