7OZ0 | pdb_00007oz0

Solution structure of the N-terminal domain of human telomeric Repeat-binding factor 2-interacting protein 1 (hRap1): implication for Rap1-TRF2 interaction in Human.

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	100 uM [U-100% 13C; U-100% 15N] human Telomeric Repeat-binding factor 2-interacting protein 1 (hRAP1)	90% H2O/10% D2O	150 mM NaCl	6.5	1 atm	293	Bruker AVANCE II 700
3	3D HNCACB	100 uM [U-100% 13C; U-100% 15N] human Telomeric Repeat-binding factor 2-interacting protein 1 (hRAP1)	90% H2O/10% D2O	150 mM NaCl	6.5	1 atm	293	Bruker AVANCE II 700
4	3D HNCO	100 uM [U-100% 13C; U-100% 15N] human Telomeric Repeat-binding factor 2-interacting protein 1 (hRAP1)	90% H2O/10% D2O	150 mM NaCl	6.5	1 atm	293	Bruker AVANCE II 700
5	3D HN(CA)CO	100 uM [U-100% 13C; U-100% 15N] human Telomeric Repeat-binding factor 2-interacting protein 1 (hRAP1)	90% H2O/10% D2O	150 mM NaCl	6.5	1 atm	293	Bruker AVANCE II 700
8	3D HCCH-TOSCY	100 uM [U-100% 13C; U-100% 15N] human Telomeric Repeat-binding factor 2-interacting protein 1 (hRAP1)	90% H2O/10% D2O	150 mM NaCl	6.5	1 atm	293	Bruker AVANCE II 700
13	3D 1H-15N NOESY	100 uM [U-100% 13C; U-100% 15N] human Telomeric Repeat-binding factor 2-interacting protein 1 (hRAP1)	90% H2O/10% D2O	150 mM NaCl	6.5	1 atm	293	Bruker AVANCE II 700
9	3D 1H-15N TOCSY	100 uM [U-100% 13C; U-100% 15N] human Telomeric Repeat-binding factor 2-interacting protein 1 (hRAP1)	90% H2O/10% D2O	150 mM NaCl	6.5	1 atm	293	Bruker AVANCE II 700
10	3D 15N NOESY-HSQC	100 uM [U-100% 13C; U-100% 15N] human Telomeric Repeat-binding factor 2-interacting protein 1 (hRAP1)	90% H2O/10% D2O	150 mM NaCl	6.5	1 atm	293	Bruker AVANCE III 950
11	3D 13C (aromatic)NOESY-HSQC	100 uM [U-100% 13C; U-100% 15N] human Telomeric Repeat-binding factor 2-interacting protein 1 (hRAP1)	90% H2O/10% D2O	150 mM NaCl	6.5	1 atm	293	Bruker AVANCE III 950
12	3D 13C(aliphatic)NOESY-HSQC	100 uM [U-100% 13C; U-100% 15N] human Telomeric Repeat-binding factor 2-interacting protein 1 (hRAP1)	90% H2O/10% D2O	150 mM NaCl	6.5	1 atm	293	Bruker AVANCE III 950

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE II	700
2	Bruker	AVANCE III	950

NMR Refinement
Method	Details	Software
simulated annealing	Explicit Water	X-PLOR NIH

NMR Ensemble Information
Conformer Selection Criteria	target function
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (closest to the average)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	processing	TopSpin	4.0.7	Bruker Biospin
2	chemical shift assignment	CcpNmr Analysis	2.4.2	CCPN
4	peak picking	CcpNmr Analysis	2.4.2	CCPN
3	structure calculation	CYANA	3.98.5	Guntert, Mumenthaler and Wuthrich
5	refinement	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.