7UQT | pdb_00007uqt

Solution NMR structure of hexahistidine tagged QseM (6H-QseM)


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC250 uM [U-13C; U-15N] 6H-QseM, 20 mM sodium chloride, 10 mM sodium phosphate2 % v/v glycerol, 98 % v/v D2O24 mM7.51 atm298Bruker AVANCE III 800
22D 1H-13C HSQC250 uM [U-13C; U-15N] 6H-QseM, 20 mM sodium chloride, 10 mM sodium phosphate2 % v/v glycerol, 98 % v/v D2O24 mM7.51 atm298Bruker AVANCE III 800
32D 1H-13C HSQC aromatic250 uM [U-13C; U-15N] 6H-QseM, 20 mM sodium chloride, 10 mM sodium phosphate2 % v/v glycerol, 98 % v/v D2O24 mM7.51 atm298Bruker AVANCE III 800
42D 1H-1H TOCSY250 uM [U-13C; U-15N] 6H-QseM, 20 mM sodium chloride, 10 mM sodium phosphate2 % v/v glycerol, 98 % v/v D2O24 mM7.51 atm298Bruker AVANCE III 800
52D 1H-1H COSY250 uM [U-13C; U-15N] 6H-QseM, 20 mM sodium chloride, 10 mM sodium phosphate2 % v/v glycerol, 98 % v/v D2O24 mM7.51 atm298Bruker AVANCE III 800
62D 1H-1H NOESY250 uM [U-13C; U-15N] 6H-QseM, 20 mM sodium chloride, 10 mM sodium phosphate2 % v/v glycerol, 98 % v/v D2O24 mM7.51 atm298Bruker AVANCE III 800
113D HBHA(CO)NH250 uM [U-13C; U-15N] 6H-QseM, 20 mM sodium chloride, 10 mM sodium phosphate2 % v/v glycerol, 98 % v/v D2O24 mM7.51 atm298Bruker AVANCE III 800
103D HNCACB250 uM [U-13C; U-15N] 6H-QseM, 20 mM sodium chloride, 10 mM sodium phosphate2 % v/v glycerol, 98 % v/v D2O24 mM7.51 atm298Bruker AVANCE III 800
93D HNCO250 uM [U-13C; U-15N] 6H-QseM, 20 mM sodium chloride, 10 mM sodium phosphate2 % v/v glycerol, 98 % v/v D2O24 mM7.51 atm298Bruker AVANCE III 800
83D HCCH-TOCSY250 uM [U-13C; U-15N] 6H-QseM, 20 mM sodium chloride, 10 mM sodium phosphate2 % v/v glycerol, 98 % v/v D2O24 mM7.51 atm298Bruker AVANCE III 800
73D HCCH-COSY250 uM [U-13C; U-15N] 6H-QseM, 20 mM sodium chloride, 10 mM sodium phosphate2 % v/v glycerol, 98 % v/v D2O24 mM7.51 atm298Bruker AVANCE III 800
163D 1H-13C NOESY250 uM [U-13C; U-15N] 6H-QseM, 20 mM sodium chloride, 10 mM sodium phosphate2 % v/v glycerol, 98 % v/v D2O24 mM7.51 atm298Bruker AVANCE III 800
153D 1H-13C NOESY aromatic250 uM [U-13C; U-15N] 6H-QseM, 20 mM sodium chloride, 10 mM sodium phosphate2 % v/v glycerol, 98 % v/v D2O24 mM7.51 atm298Bruker AVANCE III 800
143D 1H-15N NOESY250 uM [U-13C; U-15N] 6H-QseM, 20 mM sodium chloride, 10 mM sodium phosphate2 % v/v glycerol, 98 % v/v D2O24 mM7.51 atm298Bruker AVANCE III 800
132D HBCBCGCDHD250 uM [U-13C; U-15N] 6H-QseM, 20 mM sodium chloride, 10 mM sodium phosphate2 % v/v glycerol, 98 % v/v D2O24 mM7.51 atm298Bruker AVANCE III 800
122D HBCBCGCDCEHE250 uM [U-13C; U-15N] 6H-QseM, 20 mM sodium chloride, 10 mM sodium phosphate2 % v/v glycerol, 98 % v/v D2O24 mM7.51 atm298Bruker AVANCE III 800
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III800
NMR Refinement
MethodDetailsSoftware
torsion angle dynamicsCYANA was provided with a list of 680 chemical shift assignments, 1177 distance and 124 torsion angle restraints. Initial structure calculations were performed using a family of 100 structures each running for 10,000 steps of torsion angle dynamics. The 20 lowest energy structures were used for subsequent water refinement via the RECOORD method (Nederveen et al., 2005) with 500 annealing runs. The lowest energy 100 structures after annealing were refined in water with the 20 lowest energy structures creating the final ensembleCYANA
NMR Ensemble Information
Conformer Selection Criteriaall calculated structures submitted
Conformers Calculated Total Number20
Conformers Submitted Total Number20
Representative Model1 (medoid)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementCYANAGuntert P. Mumenthaler C. Wuthrich K.
2structure calculationCYANAGuntert P. Mumenthaler C. Wuthrich K.
3chemical shift assignmentCcpNmr AnalysisVranken W.F. Boucher W. Stevens T.J. Fogh R.H. Pajon A. Llinas M. Ulrich E.L. Markley J.L. Ionides J. Laue E.D.
4peak pickingCcpNmr AnalysisVranken W.F. Boucher W. Stevens T.J. Fogh R.H. Pajon A. Llinas M. Ulrich E.L. Markley J.L. Ionides J. Laue E.D.