8J3V | pdb_00008j3v

Structure of the transmembrane domain of human PD-L2

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	0.5 mM [U-15N] PD-L2_TM	90% H2O/10% D2O	0 mM	6.5	0.1 atm	310	Bruker AVANCE 600
2	2D 1H-13C HSQC	0.5 mM [U-13C; U-15N] PD-L2_TM	90% H2O/10% D2O	0 mM	6.5	0.1 atm	310	Bruker AVANCE 900
3	3D HNCO	0.5 mM [U-13C; U-15N; U-2H] PD-L2_TM	90% H2O/10% D2O	0 mM	6.5	0.1 atm	310	Bruker AVANCE 600
4	3D HNCA	0.5 mM [U-13C; U-15N; U-2H] PD-L2_TM	90% H2O/10% D2O	0 mM	6.5	0.1 atm	310	Bruker AVANCE 600
5	3D HN(CA)CO	0.5 mM [U-13C; U-15N; U-2H] PD-L2_TM	90% H2O/10% D2O	0 mM	6.5	0.1 atm	310	Bruker AVANCE 600
6	3D HN(CO)CA	0.5 mM [U-13C; U-15N; U-2H] PD-L2_TM	90% H2O/10% D2O	0 mM	6.5	0.1 atm	310	Bruker AVANCE 600
7	3D HNCACB	0.5 mM [U-13C; U-15N; U-2H] PD-L2_TM	90% H2O/10% D2O	0 mM	6.5	0.1 atm	310	Bruker AVANCE 600
8	3D 1H-15N NOESY	0.5 mM [U-13C; U-15N] PD-L2_TM	90% H2O/10% D2O	0 mM	6.5	0.1 atm	310	Bruker AVANCE 900
9	3D 1H-13C NOESY	0.5 mM [U-13C; U-15N] PD-L2_TM	90% H2O/10% D2O	0 mM	6.5	0.1 atm	310	Bruker AVANCE 900

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	600
2	Bruker	AVANCE	900

NMR Refinement
Method	Details	Software
simulated annealing		X-PLOR NIH

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	15
Representative Model	1 (closest to the average)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	refinement	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore
2	structure calculation	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore
3	chemical shift assignment	XEASY		Bartels et al.
4	peak picking	XEASY		Bartels et al.
5	collection	TopSpin		Bruker Biospin
6	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax