X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 6TC7 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2830.12 M Ethylene glycols (0.3M diethylene glycol; 0.3M triethylene glycol; 0.3M tetraethylene glycol; 0.3M pentaethylene glycol), 0.1 M Tris (base);BICINE pH 8.5, 30% v/v Precipitant Mix 1 (20% v/v PEG 500 MME; 10 % w/v PEG 20000)
Crystal Properties
Matthews coefficientSolvent content
2.6353.3

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 55.287α = 90
b = 111.812β = 92.308
c = 68.273γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray40PIXELDECTRIS PILATUS 6M2021-06-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.30.896BESSY14.3

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.5843.84199.580.99812.843.7112709
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.581.6360.418

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE1.5843.841112680537299.6140.1760.1750.194528.817
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.0640.1280.0040.049
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg16.062
r_dihedral_angle_6_deg15.482
r_lrange_it9.361
r_lrange_other9.309
r_dihedral_angle_2_deg8.465
r_dihedral_angle_1_deg6.537
r_scangle_it6.258
r_scangle_other6.257
r_mcangle_it4.613
r_mcangle_other4.613
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg16.062
r_dihedral_angle_6_deg15.482
r_lrange_it9.361
r_lrange_other9.309
r_dihedral_angle_2_deg8.465
r_dihedral_angle_1_deg6.537
r_scangle_it6.258
r_scangle_other6.257
r_mcangle_it4.613
r_mcangle_other4.613
r_scbond_other4.038
r_scbond_it4.037
r_mcbond_it2.884
r_mcbond_other2.882
r_angle_refined_deg1.623
r_angle_other_deg0.526
r_symmetry_nbd_refined0.248
r_nbd_refined0.232
r_nbd_other0.226
r_symmetry_xyhbond_nbd_refined0.222
r_xyhbond_nbd_refined0.197
r_symmetry_nbd_other0.191
r_nbtor_refined0.181
r_symmetry_xyhbond_nbd_other0.087
r_chiral_restr0.082
r_symmetry_nbtor_other0.081
r_bond_refined_d0.01
r_gen_planes_refined0.009
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4924
Nucleic Acid Atoms
Solvent Atoms587
Heterogen Atoms158

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing