8XID | pdb_00008xid

DGNNV protrusion domain structure at neutral pH

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	1.0 mM [U-13C; U-15N] protrusion domain	95% H2O/5% D2O	0.12 M	7	1 atm	298	Bruker AVANCE 600
2	2D 1H-13C HSQC	1.0 mM [U-13C; U-15N] protrusion domain	95% H2O/5% D2O	0.12 M	7	1 atm	298	Bruker AVANCE 600
3	3D CBCA(CO)NH	1.0 mM [U-13C; U-15N] protrusion domain	95% H2O/5% D2O	0.12 M	7	1 atm	298	Bruker AVANCE 600
4	3D HNCO	1.0 mM [U-13C; U-15N] protrusion domain	95% H2O/5% D2O	0.12 M	7	1 atm	298	Bruker AVANCE 600
5	3D HNCACB	1.0 mM [U-13C; U-15N] protrusion domain	95% H2O/5% D2O	0.12 M	7	1 atm	298	Bruker AVANCE 600
7	3D HBHA(CO)NH	1.0 mM [U-13C; U-15N] protrusion domain	95% H2O/5% D2O	0.12 M	7	1 atm	298	Bruker AVANCE 600
6	3D HCCH-TOCSY	1.0 mM [U-13C; U-15N] protrusion domain	95% H2O/5% D2O	0.12 M	7	1 atm	298	Bruker AVANCE 800
9	3D 1H-15N NOESY	1.0 mM [U-13C; U-15N] protrusion domain	95% H2O/5% D2O	0.12 M	7	1 atm	298	Bruker AVANCE 800
10	3D HN(CO)CA	1.0 mM [U-13C; U-15N] protrusion domain	95% H2O/5% D2O	0.12 M	7	1 atm	298	Bruker AVANCE 600

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	600
2	Bruker	AVANCE	800

NMR Refinement
Method	Details	Software
simulated annealing		X-PLOR NIH

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (medoid)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	chemical shift assignment	CARA		Keller and Wuthrich
2	structure calculation	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore
3	refinement	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore
4	peak picking	CARA		Keller and Wuthrich
5	collection	TopSpin		Bruker Biospin