9QLM | pdb_00009qlm

Solution structure of the TAF3-PHD bound to a H3K4me3Q5ser histone tail peptide with a serotonylated glutamine

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D F2-filtered NOESY	0.88 mM [U-13C; U-15N] TAF3-PHD, 0.88 mM H3K4me3Q5ser, 20 mM potassium phosphate, 4 mM potassium chloride, 10 uM zinc chloride, 0.01 % w/v sodium azide	90% H2O/10% D2O	44 mM	7.0	1 atm	293	Bruker AVANCE III 900
2	2D F2-filtered TOCSY	0.88 mM [U-13C; U-15N] TAF3-PHD, 0.88 mM H3K4me3Q5ser, 20 mM potassium phosphate, 4 mM potassium chloride, 10 uM zinc chloride, 0.01 % w/v sodium azide	90% H2O/10% D2O	44 mM	7.0	1 atm	293	Bruker AVANCE III 900
3	3D 1H-13C NOESY aliphatic	0.88 mM [U-13C; U-15N] TAF3-PHD, 0.88 mM H3K4me3Q5ser, 20 mM potassium phosphate, 4 mM potassium chloride, 10 uM zinc chloride, 0.01 % w/v sodium azide	90% H2O/10% D2O	44 mM	7.0	1 atm	293	Bruker AVANCE III 900
4	3D 1H-13C NOESY aromatic	0.88 mM [U-13C; U-15N] TAF3-PHD, 0.88 mM H3K4me3Q5ser, 20 mM potassium phosphate, 4 mM potassium chloride, 10 uM zinc chloride, 0.01 % w/v sodium azide	90% H2O/10% D2O	44 mM	7.0	1 atm	293	Bruker AVANCE III 900
5	3D 1H-15N NOESY	0.88 mM [U-13C; U-15N] TAF3-PHD, 0.88 mM H3K4me3Q5ser, 20 mM potassium phosphate, 4 mM potassium chloride, 10 uM zinc chloride, 0.01 % w/v sodium azide	90% H2O/10% D2O	44 mM	7.0	1 atm	293	Bruker AVANCE III 900
6	2D 1H-13C HSQC	0.88 mM [U-13C; U-15N] TAF3-PHD, 0.88 mM H3K4me3Q5ser, 20 mM potassium phosphate, 4 mM potassium chloride, 10 uM zinc chloride, 0.01 % w/v sodium azide	90% H2O/10% D2O	44 mM	7.0	1 atm	293	Bruker AVANCE III 900
7	2D 1H-15N HSQC	0.88 mM [U-13C; U-15N] TAF3-PHD, 0.88 mM H3K4me3Q5ser, 20 mM potassium phosphate, 4 mM potassium chloride, 10 uM zinc chloride, 0.01 % w/v sodium azide	90% H2O/10% D2O	44 mM	7.0	1 atm	293	Bruker AVANCE III 900

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE III	900

NMR Refinement
Method	Details	Software
molecular dynamics		HADDOCK

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	200
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	refinement	HADDOCK		Bonvin
2	structure calculation	HADDOCK		Bonvin
3	chemical shift assignment	Poky		Manthey, Tonelli, Clos II, Rahimi, Markley and Lee
4	peak picking	Poky		Manthey, Tonelli, Clos II, Rahimi, Markley and Lee

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.