Experiment: 9S2T

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	9	291	NULL

Crystal Properties
Matthews coefficient	Solvent content
3.31	63

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 108.5	α = 90
b = 113.26	β = 90
c = 166.71	γ = 90

Symmetry
Space Group	I 2 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	ADSC QUANTUM 315		2008-03-08	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I02	0.9507	Diamond	I02

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.24	46.95	94.1	0.06	0.071	0.039	0.998	17.2	5.6		46701

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
	2.24	2.31	69.2		0.223	0.279	0.165	0.909	4.2	3.3

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MAD	FREE R-VALUE	2.24	39.173	46699	2364	94.032	0.162	0.1599	0.1599	0.2	0.2001	35.102

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-1.583			2.055		-0.472

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	13.652
r_dihedral_angle_3_deg	12.044
r_lrange_it	6.758
r_dihedral_angle_1_deg	6.757
r_dihedral_angle_2_deg	6.331
r_scangle_it	4.07
r_mcangle_it	3.008
r_scbond_it	2.605
r_mcbond_it	1.85
r_angle_refined_deg	1.511

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	13.652
r_dihedral_angle_3_deg	12.044
r_lrange_it	6.758
r_dihedral_angle_1_deg	6.757
r_dihedral_angle_2_deg	6.331
r_scangle_it	4.07
r_mcangle_it	3.008
r_scbond_it	2.605
r_mcbond_it	1.85
r_angle_refined_deg	1.511
r_nbtor_refined	0.305
r_nbd_refined	0.199
r_symmetry_nbd_refined	0.151
r_xyhbond_nbd_refined	0.124
r_symmetry_xyhbond_nbd_refined	0.115
r_chiral_restr	0.108
r_bond_refined_d	0.006
r_gen_planes_refined	0.006

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	5194
Nucleic Acid Atoms
Solvent Atoms	434
Heterogen Atoms	31

Software

Software
Software Name	Purpose
REFMAC	refinement
Aimless	data scaling
MOSFLM	data reduction
gemmi	data extraction
SHELXDE	phasing

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.