Ligand validation:2Y5D

NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

NAP is a Ligand Of Interest in 2Y5D designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
2Y5D_NAP_B_1533	41%	2%	0.162	0.877	3.53	3.4	18	24	7	0	100%	0.76
2Y5D_NAP_A_1525	28%	5%	0.198	0.85	2.31	2.88	16	16	5	0	100%	0.76
2Y53_NAP_B_1527	24%	3%	0.229	0.861	3.14	2.85	15	21	33	0	100%	0.823
2DBQ_NAP_A_401	100%	24%	0.017	0.998	1.42	1.71	7	16	0	0	100%	1
2EXX_NAP_A_3698	100%	10%	0.025	0.996	1.63	2.7	7	18	9	0	100%	1
6IJX_NAP_A_401	100%	59%	0.014	0.998	0.63	0.95	1	3	4	0	100%	1
9FOB_NAP_A_401	100%	56%	0.023	0.996	0.78	0.91	2	3	1	0	100%	1
9OOI_NAP_B_301	100%	29%	0.025	0.997	1.81	1.07	5	4	6	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.