GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 4M4S designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 4M4S_GDP_A_530 | 91% | 46% | 0.099 | 0.985 | 0.97 | 1.12 | 1 | 2 | 2 | 0 | 100% | 0.956 |
| 4RD0_GDP_A_501 | 97% | 47% | 0.065 | 0.981 | 0.86 | 1.18 | - | 4 | 0 | 0 | 100% | 1 |
| 3PEN_GDP_A_416 | 96% | 47% | 0.077 | 0.988 | 0.9 | 1.13 | - | 4 | 2 | 0 | 100% | 1 |
| 4RD1_GDP_A_502 | 95% | 45% | 0.075 | 0.978 | 0.92 | 1.2 | 1 | 3 | 0 | 0 | 100% | 17 |
| 6I5M_GDP_A_501 | 95% | 46% | 0.088 | 0.991 | 0.79 | 1.28 | 1 | 4 | 0 | 0 | 100% | 1 |
| 4RD3_GDP_A_502 | 92% | 45% | 0.084 | 0.975 | 0.88 | 1.24 | 1 | 5 | 0 | 0 | 100% | 1 |
| 1TVK_GDP_B_1500 | 100% | 23% | 0.012 | 0.999 | 2.28 | 0.95 | 3 | 2 | 8 | 0 | 100% | 1 |
| 9BL0_GDP_A_201 | 100% | 46% | 0.016 | 0.998 | 0.96 | 1.11 | 1 | 2 | 1 | 0 | 100% | 1 |
| 9C3K_GDP_A_201 | 100% | 39% | 0.016 | 0.998 | 1.17 | 1.21 | 1 | 2 | 1 | 0 | 100% | 1 |
| 9C3L_GDP_A_201 | 100% | 49% | 0.021 | 0.997 | 0.91 | 1.04 | 1 | 1 | 0 | 0 | 100% | 1 |
| 9C3N_GDP_A_202 | 100% | 38% | 0.017 | 0.998 | 1.36 | 1.06 | 3 | 1 | 0 | 0 | 100% | 1 |
