GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 5M6X designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5M6X_GDP_B_202 | 87% | 44% | 0.103 | 0.975 | 0.92 | 1.25 | 1 | 4 | 0 | 0 | 100% | 1 |
| 5M6X_GDP_I_202 | 80% | 45% | 0.117 | 0.967 | 0.91 | 1.19 | - | 4 | 0 | 0 | 100% | 1 |
| 1OW3_GDP_B_680 | 98% | 39% | 0.059 | 0.985 | 1.05 | 1.33 | 1 | 3 | 0 | 0 | 100% | 1 |
| 6R3V_GDP_B_202 | 95% | 42% | 0.076 | 0.982 | 1.18 | 1.08 | 2 | 3 | 0 | 0 | 100% | 1 |
| 7QTM_GDP_I_201 | 87% | 29% | 0.104 | 0.978 | 1.34 | 1.51 | 3 | 6 | 0 | 0 | 100% | 1 |
| 7QSC_GDP_B_201 | 80% | 28% | 0.101 | 0.949 | 1.33 | 1.53 | 3 | 6 | 0 | 0 | 100% | 1 |
| 5M70_GDP_G_202 | 74% | 45% | 0.129 | 0.958 | 0.9 | 1.2 | - | 4 | 0 | 0 | 100% | 1 |
| 1TVK_GDP_B_1500 | 100% | 23% | 0.012 | 0.999 | 2.28 | 0.95 | 3 | 2 | 8 | 0 | 100% | 1 |
| 9BL0_GDP_A_201 | 100% | 46% | 0.016 | 0.998 | 0.96 | 1.11 | 1 | 2 | 1 | 0 | 100% | 1 |
| 9C3K_GDP_A_201 | 100% | 39% | 0.016 | 0.998 | 1.17 | 1.21 | 1 | 2 | 1 | 0 | 100% | 1 |
| 9C3L_GDP_A_201 | 100% | 49% | 0.021 | 0.997 | 0.91 | 1.04 | 1 | 1 | 0 | 0 | 100% | 1 |
| 9C3N_GDP_A_202 | 100% | 38% | 0.017 | 0.998 | 1.36 | 1.06 | 3 | 1 | 0 | 0 | 100% | 1 |
