GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 5N6O designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5N6O_GDP_A_201 | 80% | 62% | 0.129 | 0.977 | 0.84 | 0.63 | 2 | - | 0 | 0 | 100% | 1 |
| 5N6O_GDP_B_201 | 78% | 58% | 0.131 | 0.975 | 0.78 | 0.85 | - | 1 | 0 | 0 | 100% | 1 |
| 1HE1_GDP_C_200 | 95% | 32% | 0.085 | 0.989 | 1.3 | 1.41 | 4 | 5 | 0 | 0 | 100% | 1 |
| 8S1N_GDP_A_202 | 92% | 39% | 0.072 | 0.964 | 1.01 | 1.35 | 1 | 4 | 0 | 0 | 100% | 1 |
| 5O33_GDP_A_203 | 91% | 45% | 0.073 | 0.961 | 0.96 | 1.17 | 1 | 2 | 1 | 0 | 100% | 0.79 |
| 2W2T_GDP_A_1181 | 84% | 28% | 0.113 | 0.977 | 1.03 | 1.84 | 2 | 8 | 1 | 0 | 100% | 1 |
| 1DS6_GDP_A_194 | 81% | 4% | 0.121 | 0.975 | 2.79 | 2.92 | 10 | 10 | 0 | 0 | 100% | 1 |
| 1TVK_GDP_B_1500 | 100% | 23% | 0.012 | 0.999 | 2.28 | 0.95 | 3 | 2 | 8 | 0 | 100% | 1 |
| 9BL0_GDP_A_201 | 100% | 46% | 0.016 | 0.998 | 0.96 | 1.11 | 1 | 2 | 1 | 0 | 100% | 1 |
| 9C3K_GDP_A_201 | 100% | 39% | 0.016 | 0.998 | 1.17 | 1.21 | 1 | 2 | 1 | 0 | 100% | 1 |
| 9C3L_GDP_A_201 | 100% | 49% | 0.021 | 0.997 | 0.91 | 1.04 | 1 | 1 | 0 | 0 | 100% | 1 |
| 9C3N_GDP_A_202 | 100% | 38% | 0.017 | 0.998 | 1.36 | 1.06 | 3 | 1 | 0 | 0 | 100% | 1 |
