Paper Published: PDB-IHM

08/12 

From PDB-IHM: A System for Deposition, Curation, Validation, and Dissemination of Integrative Structures

Structures determined by integrative/hybrid methods (IHM) are archived alongside experimental structures in PDB as PDB-IHM.

These structures are processed by PDB-IHM in parallel to the wwPDB OneDep system and disseminated synchronously with PDB. Integrative structures are assigned PDB accession codes and digital object identifiers.

Integrative structures can be accessed from the PDB archive, the PDB-IHM website, and RCSB.org.

Read more:

PDB-IHM: A System for Deposition, Curation, Validation, and Dissemination of Integrative Structures
Brinda Vallat, Benjamin M. Webb, Arthur Zalevsky, Hongsuda Tangmunarunkit, Monica R. Sekharan, Serban Voinea, Aref Shafaeibejestan, Jared Sagendorf, Jeffrey C. Hoch, Genji Kurisu, Kyle L. Morris, Sameer Velankar, Carl Kesselman, Stephen K. Burley, Helen M. Berman, Andrej Sali
(2025) Journal of Molecular Biology 437: 168963 10.1016/j.jmb.2025.168963

News Index

• 08/14 Poster Prize Awarded at ACA 2025

• 08/12 Paper Published: PDB-IHM

• 08/11 Register for the Sept 25 Virtual Office Hour on PDB Policies

• 08/05 Register for the Aug 11 Virtual Office Hour on Pairwise Alignment

• 08/05 Paper Published: rcsb-api

• 08/01 August 2 is National Coloring Book Day

• 07/29 Register Now for Webinar: Searching the PDB for high-quality ligand-bound structures

• 07/29 Celebrate World RNA Day on August 1 with Eterna

• 07/22 Prepare Depositions Using pdb_extract

• 07/22 PDB-101 Focus: Peak Performance

• 07/18 Meet the RCSB PDB at ACA 75

• 07/15 wwPDB News: Transitioning to PDBx/mmCIF and Extended PDB IDs

• 07/15 Color the Diverse 3D Shapes Studied by Crystallographers

• 07/08 Summer Newsletter Published

• 07/03 Register for the Aug 11 Virtual Office Hour on Pairwise Alignment

• 07/01 Download New Poster: CSMs and PDB Structures

• 07/01 Watch the Webinar: Python For Cheminformatics-Driven Molecular Docking

• 06/25 wwPDB News: Extension to EMDB Accession Codes

• 06/24 Python Toolkit for Accessing RCSB.org Search and Data APIs

• 06/19 Watch: Deep Dive into Computed Structure Model Exploration at RCSB.org

• 06/16 Register for the ACA Workshop on PDB Deposition

• 06/13 Download an image of H5N1

• 06/10 PDB-101 Focus: Peak Performance

• 06/09 Watch the Sequence Annotations Viewer Office Hour

• 06/03 Electron Density Maps and Coefficient Files

• 05/28 Explore Integrative Structures at RCSB.org

• 05/26 Annual Report Published

• 05/22 Register Now for Tutorial: Introduction to Molecular Animation

• 05/20 Video: Immunology and Cancer

• 05/19 Announcement: Ligand Expo To Be Retired in 2025

• 05/19 Access Computed Structure Model Annotations

• 05/16 PDB-101 Focus: Peak Performance

• 05/13 Paper Published: A new chapter for Molecule of the Month

• 05/12 Education Corner: BASIL, RCSB Protein Data Bank, and the NSF

• 05/06 wwPDB News: Poster Prize Awarded at ASBMB

• 05/06 Watch the Webinar: Seeing Bird Flu in 3D

• 05/04 Commemorating 75 Years of Discovery and Innovation at the NSF

• 05/01 Toggle to "Opt-in" to Access Computed Structure Models Alongside PDB Data

• 04/28 Watch the Webinar: Streamlining Access to RCSB PDB APIs with Python

• 04/25 Education Corner: Paper Nucleic Acid Models for Hands-on Education

• 04/22 wwPDB Validation Reports Accessible via API

• 04/22 Celebrate DNA Day on April 25

• 04/18 April 22 is Earth Day

• 04/16 wwPDB News: Download Snapshots of the PDB Core Archive via HTTPS, SYNC, RSYNC, or FTP

• 04/15 Introducing Extended PDB IDs at RCSB.org

• 04/15 Paper Published: Visualizing and analyzing 3D biomolecular structures using Mol*

• 04/11 Meet RCSB PDB at ASBMB

• 04/08 Sequence Annotations Viewer: Geometry Validation

• 04/07 Spring Newsletter Published

• 04/03 PDB-101 Focus: Peak Performance

• 04/01 Paper Published: PDB and a transformative impact on science and society

• 03/27 Register Now for Crash Course: Python For Cheminformatics-Driven Molecular Docking

• 03/27 Guide to Understanding PDB Data: Computed Structure Models

• 03/24 Developers: Switch to Sequence Coordinates Service by May 31, 2025

• 03/20 Meet RCSB PDB at the American Chemical Society Meeting

• 03/19 March 24 is World TB Day

• 03/15 PDB-101 Focus: Peak Performance

• 03/11 wwPDB News: Poster Prize Awarded at The Biophysical Society Meeting

• 03/10 wwPDB News: New version of PDB-IHM validation reports now include assessments of crosslinking mass spectrometry-based structure models

• 03/09 March 10-16: Brain Awareness Week

• 03/06 Register for the April 10 Virtual Office Hour on Sequence Annotations Viewer

• 03/05 IUCr2026 Awaits

• 03/04 Take the User Survey on Statistics and Win

• 03/04 Molecular Landscapes

• 03/03 Register for the May 8 Workshop on PDB Deposition

• 03/03 Register for March Training Events

• 03/02 March 4 is International HPV Awareness Day

• 02/25 Register for the April 7 Virtual Office Hour on Depositing IHM Data

• 02/25 Paper Published: From two epidemics to the global pandemic to mRNA vaccines and Paxlovid

• 02/21 Paper Published: Impact of the PDB on drug approvals

• 02/17 PDB-101 Focus: Peak Performance

• 02/17 Register Now for Webinar on API Access with Python

• 02/13 Meet RCSB PDB at The Biophysical Society Meeting

• 02/10 Register for the March 13 Virtual Office Hour on Supporting Extended PDB IDs

• 02/09 Molecular Valentines

• 02/05 Behind Molecule of the Month

• 02/02 Register Now for Webinar on Seeing Bird Flu in 3D

• 02/01 February 4 is World Cancer Day

• 01/28 Frontiers in Data Panel Webinar: Preparing Structural Science Data for 2085

• 01/23 Award-Winning Image

• 01/23 Developers: Collaborate with RCSB PDB at Rutgers

• 01/21 Watch the Webinar: Unlock Rapid Analyses Across the Whole PDB Using BinaryCIF

• 01/19 January is Cervical Cancer Awareness Month

• 01/17 Undergrads: Spend your summer with RCSB PDB

• 01/16 wwPDB News: PDB-Dev now PDB-IHM

• 01/16 Top Molecules of the Month in 2024

• 01/14 Winter Newsletter Published

• 01/12 Paper Published: Updated resources for exploring PDB structures and Computed Structure Models

• 01/09 Celebrate #NationalMilkDay

• 01/05 wwPDB News: Time-stamped Copies of PDB and EMDB Archives

• 01/05 Molecule of the Month: Celebrating 25 Years of Storytelling and Announcing New Beginnings