Structure of the complex of lactoferrin C-lobe with melibiose at 2.0 A resolution
Mir, R., Prem kumar, R., Sinha, M., Singh, N., Sharma, S., Kaur, P., Bhushan, A., Singh, T.P.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Lactotransferrin | 345 | Bos taurus | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for P24627 (Bos taurus) Explore P24627  Go to UniProtKB:  P24627 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P24627 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-D-mannopyranose-(1-4)-[beta-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | B | 5 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G60760VF GlyCosmos:  G60760VF GlyGen:  G60760VF |
Entity ID: 3 | |||||
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Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | C | 2 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G42666HT GlyCosmos:  G42666HT GlyGen:  G42666HT |
Entity ID: 4 | |||||
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Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
beta-D-mannopyranose-(1-4)-alpha-D-mannopyranose-(1-4)-beta-D-mannopyranose-(1-4)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | D | 6 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G38475OD GlyCosmos:  G38475OD GlyGen:  G38475OD |
Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SO4 Query on SO4 | J [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
ZN Query on ZN | H [auth A], I [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
CO3 Query on CO3 | G [auth A] | CARBONATE ION C O3 BVKZGUZCCUSVTD-UHFFFAOYSA-L | |||
FE Query on FE | F [auth A] | FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N |
Entity ID: 5 | |||||
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ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_900041 Query on PRD_900041 | E | beta-allolactose | Oligosaccharide / Inducer |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 63.588 | α = 90 |
b = 50.4 | β = 107.86 |
c = 65.93 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
AUTOMAR | data reduction |
SCALEPACK | data scaling |
AMoRE | phasing |