Download MendeleyX-ray co-structure of nuclear receptor ROR-gammat Ligand Binding Domain with a inverse agonist and SRC2 peptide
Li, X.To be published.
5VQL
X-ray co-structure of nuclear receptor ROR-gammat Ligand Binding Domain with a inverse agonist and SRC2 peptide
- PDB DOI: https://doi.org/10.2210/pdb5VQL/pdb
- Classification: TRANSCRIPTION
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2017-05-09 Released: 2018-05-16
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.70 Å
- R-Value Free: 0.251
- R-Value Work: 0.218
- R-Value Observed: 0.220
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Nuclear receptor ROR-gamma, SRC2 chimera | 280 | Homo sapiens | Mutation(s): 0 Gene Names: RORC, NR1F3, RORG, RZRG |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P51449 (Homo sapiens) Explore P51449 Go to UniProtKB: P51449 | |||||
PHAROS: P51449 GTEx: ENSG00000143365 | |||||
Find proteins for Q15596 (Homo sapiens) Explore Q15596 Go to UniProtKB: Q15596 | |||||
PHAROS: Q15596 GTEx: ENSG00000140396 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Groups | P51449Q15596 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 9GS Query on 9GS | C [auth A] | 5'-(4-cyclopropyl-6-methoxypyrimidin-5-yl)-N-{[4-(ethylsulfonyl)phenyl]methyl}spiro[cyclopentane-1,3'-pyrrolo[3,2-b]pyridine]-1'(2'H)-carboxamide C29 H33 N5 O4 S PWIXSNKHPMGRRW-UHFFFAOYSA-N |  | ||
| NA Query on NA | B [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.70 Å
- R-Value Free: 0.251
- R-Value Work: 0.218
- R-Value Observed: 0.220
- Space Group: P 41 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 61.325 | α = 90 |
| b = 61.325 | β = 90 |
| c = 155.578 | γ = 90 |
| Software Name | Purpose |
|---|---|
| BUSTER | refinement |
| d*TREK | data reduction |
| d*TREK | data scaling |
| PHENIX | phasing |
Entry History
Deposition Data
- Released Date: 2018-05-16 Deposition Author(s): Li, X.
Revision History (Full details and data files)
- Version 1.0: 2018-05-16
Type: Initial release - Version 1.1: 2024-03-13
Changes: Data collection, Database references
