RCSB PDB: Search

1MO9 \| pdb_00001mo9	Download File View File

NADPH DEPENDENT 2-KETOPROPYL COENZYME M OXIDOREDUCTASE/CARBOXYLASE COMPLEXED WITH 2-KETOPROPYL COENZYME M

Nocek, B., Jang, S.B., Jeong, M.S., Clark, D.D., Ensign, S.A., Peters, J.W.

(2002) Biochemistry 41: 12907-12913

Released	2002-11-27
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Xanthobacter autotrophicus Py2
Macromolecule	orf3 (protein)
Unique Ligands	FAD, KPC

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1MOK \| pdb_00001mok	Download File View File

NADPH DEPENDENT 2-KETOPROPYL COENZYME M OXIDOREDUCTASE/CARBOXYLASE

Nocek, B., Jang, S.B., Jeong, M.S., Clark, D.D., Ensign, S.A., Peters, J.W.

(2002) Biochemistry 41: 12907-12913

Released	2002-11-27
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Xanthobacter autotrophicus Py2
Macromolecule	orf3 (protein)
Unique Ligands	FAD

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2C3C \| pdb_00002c3c	Download File View File

2.01 Angstrom X-ray crystal structure of a mixed disulfide between coenzyme M and NADPH-dependent oxidoreductase 2-ketopropyl coenzyme M carboxylase

Pandey, A.S., Nocek, B., Clark, D.D., Ensign, S.A., Peters, J.W.

(2006) Biochemistry 45: 113

Released	2005-12-12
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Xanthobacter autotrophicus Py2
Macromolecule	2-OXOPROPYL-COM REDUCTASE (protein)
Unique Ligands	ACN, COM, FAD, NAP

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2C3D \| pdb_00002c3d	Download File View File

2.15 Angstrom crystal structure of 2-ketopropyl coenzyme M oxidoreductase carboxylase with a coenzyme M disulfide bound at the active site

Pandey, A.S., Nocek, B., Clark, D.D., Ensign, S.A., Peters, J.W.

(2006) Biochemistry 45: 113

Released	2005-11-07
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Xanthobacter autotrophicus Py2
Macromolecule	2-OXOPROPYL-COM REDUCTASE (protein)
Unique Ligands	COM, FAD

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2CFC \| pdb_00002cfc	Download File View File

structural basis for stereo selectivity in the (R)- and (S)- hydroxypropylethane thiosulfonate dehydrogenases

Krishnakumar, A.M., Nocek, B.P., Clark, D.D., Ensign, S.A., Peters, J.W.

(2006) Biochemistry 45: 8831

Released	2006-07-26
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Xanthobacter autotrophicus Py2
Macromolecule	2-(R)-HYDROXYPROPYL-COM DEHYDROGENASE (protein)
Unique Ligands	KPC, NAD

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3Q6J \| pdb_00003q6j	Download File View File

Structural basis for carbon dioxide binding by 2-ketopropyl coenzyme M Oxidoreductase/Carboxylase

Pandey, A.S., Mulder, D.W., Ensign, S.A., Peters, J.W.

(2011) FEBS Lett 585: 459-464

Released	2011-02-16
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Xanthobacter autotrophicus Py2
Macromolecule	2-oxopropyl-CoM reductase, carboxylating (protein)
Unique Ligands	ACN, BCT, CO2, COM, FAD, KPC, MG, NAP

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4DYV \| pdb_00004dyv	Download File View File

Crystal structure of a short-chain dehydrogenase/reductase SDR from Xanthobacter autotrophicus Py2

Agarwal, R., Chamala, S., Evans, B., Foti, R., Hillerich, B., Kar, A., Lafleur, J., Siedel, R., Villigas, G., Zencheck, W., Gizzi, A., Almo, S.C., Swaminathan, S., New York Structural Genomics Research Consortium (NYSGRC)

To be published

Released	2012-03-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Xanthobacter autotrophicus Py2
Macromolecule	Short-chain dehydrogenase/reductase SDR (protein)
Unique Ligands	CL

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4GH5 \| pdb_00004gh5	Download File View File

Crystal structure of S-2-hydroxypropyl coenzyme M dehydrogenase (S-HPCDH)

Bakelar, J.W., Johnson, S.J.

(2013) Arch Biochem Biophys 533: 62-68

Released	2013-03-27
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Xanthobacter autotrophicus Py2
Macromolecule	Short-chain dehydrogenase/reductase SDR (protein)
Unique Ligands	ACT, NAD

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4HZ2 \| pdb_00004hz2	Download File View File

Crystal structure of glutathione s-transferase xaut_3756 (target efi-507152) from xanthobacter autotrophicus py2

Patskovsky, Y., Toro, R., Bhosle, R., Hillerich, B., Seidel, R.D., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Zencheck, W.D., Imker, H.J., Al Obaidi, N.F., Stead, M., Love, J., Gerlt, J.A., Armstrong, R.N., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2012-11-28
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Xanthobacter autotrophicus Py2
Macromolecule	Glutathione S-transferase domain (protein)
Unique Ligands	BEZ, GSH, UNL

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4ITU \| pdb_00004itu	Download File View File

Crystal structure of S-2-HYDROXYPROPYL COENZYME M DEHYDROGENASE (S-HPCDH) bound to S-HPC AND NADH

Bakelar, J.W., Johnson, S.J.

(2013) Arch Biochem Biophys 533: 62-68

Released	2013-03-27
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Xanthobacter autotrophicus Py2
Macromolecule	Short-chain dehydrogenase/reductase SDR (protein)
Unique Ligands	1HS, NAI

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4K29 \| pdb_00004k29	Download File View File

Crystal structure of an enoyl-CoA hydratase/isomerase from Xanthobacter autotrophicus Py2

Eswaramoorthy, S., Chamala, S., Evans, B., Foti, F., Gizzi, A., Hillerich, B., Kar, A., Lafleur, J., Seidel, R., Villigas, G., Zencheck, W., Al Obaidi, N., Almo, S.C., Swaminathan, S., New York Structural Genomics Research Consortium (NYSGRC)

To be published

Released	2013-04-24
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Xanthobacter autotrophicus Py2
Macromolecule	Enoyl-CoA hydratase/isomerase (protein)
Unique Ligands	GOL, TLA

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4OVR \| pdb_00004ovr	Download File View File

CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM XANTHOBACTER AUTOTROPHICUS PY2, TARGET EFI-510329, WITH BOUND BETA-D-GALACTURONATE

Vetting, M.W., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Stead, M., Attonito, J.D., Scott Glenn, A., Chowdhury, S., Evans, B., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

(2015) Biochemistry 54: 909-931

Released	2014-01-22
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Xanthobacter autotrophicus Py2
Macromolecule	TRAP dicarboxylate transporter, DctP subunit (protein)
Unique Ligands	CL, GTR

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4XA8 \| pdb_00004xa8	Download File View File

Crystal structure of D-isomer specific 2-hydroxyacid dehydrogenase from Xanthobacter autotrophicus Py2

Handing, K.B., Gasiorowska, O.A., Shabalin, I.G., Cymborowski, M.T., Bonanno, J., Almo, S.C., Minor, W., New York Structural Genomics Research Consortium (NYSGRC)

To be published

Released	2015-01-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Xanthobacter autotrophicus Py2
Macromolecule	D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding (protein)

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5M45 \| pdb_00005m45	Download File View File

Structure of Acetone Carboxylase purified from Xanthobacter autotrophicus

Kabasakal, B.V., Wells, J.N., Nwaobi, B.C., Eilers, B.J., Peters, J.W., Murray, J.W.

(2017) Sci Rep 7: 7234-7234

Released	2017-08-09
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Xanthobacter autotrophicus Py2
Macromolecule	Acetone carboxylase alpha subunit (protein) Acetone carboxylase beta subunit (protein) Acetone carboxylase gamma subunit (protein)
Unique Ligands	ACT, AE4, AMP, MG, MN, ZN

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5SVB \| pdb_00005svb	Download File View File

Mechanism of ATP-Dependent Acetone Carboxylation, Acetone Carboxylase AMP bound structure

Eilers, B.J., Mus, F., Alleman, A.B., Kabasakal, B.V., Murray, J.W., Nocek, B.P., Dubois, J.L., Peters, J.W.

(2017) Sci Rep 7: 7234-7234

Released	2017-08-09
Method	X-RAY DIFFRACTION 2.645 Å
Organisms	Xanthobacter autotrophicus Py2
Macromolecule	Acetone carboxylase alpha subunit (protein) Acetone carboxylase beta subunit (protein) Acetone carboxylase gamma subunit (protein)
Unique Ligands	AMP, MN, SO4, ZN

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5SVC \| pdb_00005svc	Download File View File

Mechanism of ATP-Dependent Acetone Carboxylation, Acetone Carboxylase nucleotide-free structure

Eilers, B.J., Mus, F., Alleman, A.B., Kabasakal, B.V., Murray, J.W., Nocek, B.P., Dubois, J.L., Peters, J.W.

(2017) Sci Rep 7: 7234-7234

Released	2017-08-09
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Xanthobacter autotrophicus Py2
Macromolecule	Acetone carboxylase alpha subunit (protein) Acetone carboxylase beta subunit (protein) Acetone carboxylase gamma subunit (protein)
Unique Ligands	MN, SO4, ZN

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5VG6 \| pdb_00005vg6	Download File View File

Crystal structure of D-isomer specific 2-hydroxyacid dehydrogenase from Xanthobacter autotrophicus Py2 in complex with NADPH and MES.

Lipowska, J., Shabalin, I.G., Kutner, J., Gasiorowska, O.A., Almo, S.C., Minor, W., New York Structural Genomics Research Consortium (NYSGRC)

To be published

Released	2017-04-26
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Xanthobacter autotrophicus Py2
Macromolecule	D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding (protein)
Unique Ligands	MES, NDP

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7MGN \| pdb_00007mgn	Download File View File

Crystal structure of F501H/H506E variant of 2-ketopropyl coenzyme M oxidoreductase/carboxylase (2-KPCC) from Xanthobacter autotrophicus

Zadvornyy, O.A., Prussia, G., Peters, J.W.

(2021) J Biological Chem 297: 100961-100961

Released	2021-07-21
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Xanthobacter autotrophicus Py2
Macromolecule	2-oxopropyl-CoM reductase, carboxylating (protein)
Unique Ligands	COM, FDA, MG

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7MGO \| pdb_00007mgo	Download File View File

Crystal structure of F501H variant of 2-ketopropyl coenzyme M oxidoreductase/carboxylase (2-KPCC) from Xanthobacter autotrophicus

Prussia, G., Zadvornyy, O.A., Peters, J.W.

(2021) J Biological Chem 297: 100961-100961

Released	2021-07-21
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Xanthobacter autotrophicus Py2
Macromolecule	2-oxopropyl-CoM reductase, carboxylating (protein)
Unique Ligands	COM, FDA, MG

1MO9 | pdb_00001mo9

NADPH DEPENDENT 2-KETOPROPYL COENZYME M OXIDOREDUCTASE/CARBOXYLASE COMPLEXED WITH 2-KETOPROPYL COENZYME M

1MOK | pdb_00001mok

NADPH DEPENDENT 2-KETOPROPYL COENZYME M OXIDOREDUCTASE/CARBOXYLASE

2C3C | pdb_00002c3c

2.01 Angstrom X-ray crystal structure of a mixed disulfide between coenzyme M and NADPH-dependent oxidoreductase 2-ketopropyl coenzyme M carboxylase

2C3D | pdb_00002c3d

2.15 Angstrom crystal structure of 2-ketopropyl coenzyme M oxidoreductase carboxylase with a coenzyme M disulfide bound at the active site

2CFC | pdb_00002cfc

structural basis for stereo selectivity in the (R)- and (S)- hydroxypropylethane thiosulfonate dehydrogenases

3Q6J | pdb_00003q6j

Structural basis for carbon dioxide binding by 2-ketopropyl coenzyme M Oxidoreductase/Carboxylase

4DYV | pdb_00004dyv

Crystal structure of a short-chain dehydrogenase/reductase SDR from Xanthobacter autotrophicus Py2

4GH5 | pdb_00004gh5

Crystal structure of S-2-hydroxypropyl coenzyme M dehydrogenase (S-HPCDH)

4HZ2 | pdb_00004hz2

Crystal structure of glutathione s-transferase xaut_3756 (target efi-507152) from xanthobacter autotrophicus py2

4ITU | pdb_00004itu

Crystal structure of S-2-HYDROXYPROPYL COENZYME M DEHYDROGENASE (S-HPCDH) bound to S-HPC AND NADH

4K29 | pdb_00004k29

Crystal structure of an enoyl-CoA hydratase/isomerase from Xanthobacter autotrophicus Py2

4OVR | pdb_00004ovr

CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM XANTHOBACTER AUTOTROPHICUS PY2, TARGET EFI-510329, WITH BOUND BETA-D-GALACTURONATE

4XA8 | pdb_00004xa8

Crystal structure of D-isomer specific 2-hydroxyacid dehydrogenase from Xanthobacter autotrophicus Py2

5M45 | pdb_00005m45

Structure of Acetone Carboxylase purified from Xanthobacter autotrophicus

5SVB | pdb_00005svb

Mechanism of ATP-Dependent Acetone Carboxylation, Acetone Carboxylase AMP bound structure

5SVC | pdb_00005svc

Mechanism of ATP-Dependent Acetone Carboxylation, Acetone Carboxylase nucleotide-free structure

5VG6 | pdb_00005vg6

Crystal structure of D-isomer specific 2-hydroxyacid dehydrogenase from Xanthobacter autotrophicus Py2 in complex with NADPH and MES.

7MGN | pdb_00007mgn

Crystal structure of F501H/H506E variant of 2-ketopropyl coenzyme M oxidoreductase/carboxylase (2-KPCC) from Xanthobacter autotrophicus

7MGO | pdb_00007mgo

Crystal structure of F501H variant of 2-ketopropyl coenzyme M oxidoreductase/carboxylase (2-KPCC) from Xanthobacter autotrophicus

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1MO9 | pdb_00001mo9

1MOK | pdb_00001mok

2C3C | pdb_00002c3c

2C3D | pdb_00002c3d

2CFC | pdb_00002cfc

3Q6J | pdb_00003q6j

4DYV | pdb_00004dyv

4GH5 | pdb_00004gh5

4HZ2 | pdb_00004hz2

4ITU | pdb_00004itu

4K29 | pdb_00004k29

4OVR | pdb_00004ovr

4XA8 | pdb_00004xa8

5M45 | pdb_00005m45

5SVB | pdb_00005svb

5SVC | pdb_00005svc

5VG6 | pdb_00005vg6

7MGN | pdb_00007mgn

7MGO | pdb_00007mgo