1D3L

D1D2-ICAM-1 FULLY GLYCOSYLATED, VARIATION OF D1-D2 INTERDOMAIN ANGLE IN DIFFERENT CRYSTAL STRUCTURES.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.25 Å
  • R-Value Work: 0.371 

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This is version 1.2 of the entry. See complete history


Literature

Structural studies of two rhinovirus serotypes complexed with fragments of their cellular receptor.

Kolatkar, P.R.Bella, J.Olson, N.H.Bator, C.M.Baker, T.S.Rossmann, M.G.

(1999) EMBO J 18: 6249-6259

  • DOI: 10.1093/emboj/18.22.6249
  • Primary Citation of Related Structures:  
    1D3E, 1D3L, 1D3I

  • PubMed Abstract: 
  • Two human rhinovirus serotypes complexed with two- and five-domain soluble fragments of the cellular receptor, intercellular adhesion molecule-1, have been investigated by X-ray crystallographic analyses of the individual components and by cryo-electron microscopy of the complexes ...

    Two human rhinovirus serotypes complexed with two- and five-domain soluble fragments of the cellular receptor, intercellular adhesion molecule-1, have been investigated by X-ray crystallographic analyses of the individual components and by cryo-electron microscopy of the complexes. The three-dimensional image reconstructions provide a molecular envelope within which the crystal structures of the viruses and the receptor fragments can be positioned with accuracy. The N-terminal domain of the receptor binds to the rhinovirus 'canyon' surrounding the icosahedral 5-fold axes. Fitting of molecular models into the image reconstruction density identified the residues on the virus that interact with those on the receptor surface, demonstrating complementarity of the electrostatic patterns for the tip of the N-terminal receptor domain and the floor of the canyon. The complexes seen in the image reconstructions probably represent the first stage of a multistep binding process. A mechanism is proposed for the subsequent viral uncoating process.


    Related Citations: 
    • The Structure of the Two Amino-Terminal Domains of Human Icam-1 Suggests How It Functions as a Rhinovirus Receptor and as an Lfa-1 Integrin Ligand.
      Bella, J., Kolatkar, P.R., Marlor, C.W., Greve, J.M., Rossmann, M.G.
      (1998) Proc Natl Acad Sci U S A 95: 4140
    • A Dimeric Crystal Structure for the N-Terminal Two Domains of Intercellular Adhesion Molecule-1
      Casasnovas, J.M., Stehle, T., Liu, J.H., Wang, J.H., Springer, T.A.
      (1998) Proc Natl Acad Sci U S A 95: 4134
    • Preliminary X-Ray Crystallographic Analysis of Intercellular Adhesion Molecule-1
      Kolatkar, P.R., Oliveira, M.A., Rossmann, M.G., Robbins, A.H., Katti, S., Hoover-Litty, H., Forte, C., Greve, J.M., Mcclelland, A., Olson, N.H.
      (1992) J Mol Biol 225: 1127

    Organizational Affiliation

    Department of Biological Sciences, Purdue University, West Lafayette, IN 47907-1392, USA.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
PROTEIN (INTERCELLULAR ADHESION MOLECULE-1)A185Homo sapiensMutation(s): 0 
Gene Names: ICAM1
UniProt & NIH Common Fund Data Resources
Find proteins for P05362 (Homo sapiens)
Explore P05362 
Go to UniProtKB:  P05362
PHAROS:  P05362
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.25 Å
  • R-Value Work: 0.371 
  • Space Group: P 31 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 54.07α = 90
b = 54.07β = 90
c = 145.77γ = 120
Software Package:
Software NamePurpose
AMoREphasing

Structure Validation

View Full Validation Report




Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1999-12-01
    Type: Initial release
  • Version 1.1: 2008-04-27
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance