2J3G
L-ficolin
- PDB DOI: https://doi.org/10.2210/pdb2J3G/pdb
- Classification: LECTIN
- Organism(s): Homo sapiens
- Expression System: Trichoplusia ni
- Mutation(s): No 
- Deposited: 2006-08-21 Released: 2007-01-23 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.259 
- R-Value Work: 0.202 
- R-Value Observed: 0.205 
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
FICOLIN-2 | 218 | Homo sapiens | Mutation(s): 0  | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q15485 (Homo sapiens) Explore Q15485  Go to UniProtKB:  Q15485 | |||||
PHAROS:  Q15485 GTEx:  ENSG00000160339  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q15485 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | G | 5 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G00395TQ GlyCosmos:  G00395TQ GlyGen:  G00395TQ |
Small Molecules
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
P4C Query on P4C | N [auth E] | O-ACETALDEHYDYL-HEXAETHYLENE GLYCOL C14 H28 O8 CTLLATPOKUEFSQ-UHFFFAOYSA-N | |||
CA Query on CA | I [auth A] J [auth B] K [auth C] L [auth D] M [auth E] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.259 
- R-Value Work: 0.202 
- R-Value Observed: 0.205 
- Space Group: P 32
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 98.89 | α = 90 |
b = 98.89 | β = 90 |
c = 141.975 | γ = 120 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
XDS | data reduction |
XSCALE | data scaling |
AMoRE | phasing |
Entry History 
Deposition Data
- Released Date: 2007-01-23  Deposition Author(s): Garlatti, V., Gaboriaud, C.
Revision History (Full details and data files)
- Version 1.0: 2007-01-23
Type: Initial release - Version 1.1: 2011-05-08
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2019-04-03
Changes: Advisory, Data collection, Derived calculations, Other, Source and taxonomy - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Derived calculations, Other, Structure summary - Version 2.1: 2023-12-13
Changes: Advisory, Data collection, Database references, Derived calculations, Refinement description, Structure summary