2QS9 | pdb_00002qs9

Crystal structure of the human retinoblastoma-binding protein 9 (RBBP-9). NESG target HR2978

PDB DOI: https://doi.org/10.2210/pdb2QS9/pdb

Classification: STRUCTURAL PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2007-07-30 Released: 2007-08-14
Deposition Author(s): Vorobiev, S.M., Su, M., Seetharaman, J., Kuzin, A., Chen, C.X., Cunningham, K., Owens, L., Maglaqui, M., Xiao, R., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.72 Å
R-Value Free:
0.203 (Depositor), 0.203 (DCC)
R-Value Work:
0.183 (Depositor), 0.183 (DCC)
R-Value Observed:
0.183 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of human retinoblastoma binding protein 9.

Vorobiev, S.M., Su, M., Seetharaman, J., Huang, Y.J., Chen, C.X., Maglaqui, M., Janjua, H., Proudfoot, M., Yakunin, A., Xiao, R., Acton, T.B., Montelione, G.T., Tong, L.

(2008) Proteins 74: 526-529

PubMed: 19004028 Search on PubMedSearch on PubMed Central
DOI: https://doi.org/10.1002/prot.22278
Primary Citation of Related Structures:
2QS9

Organizational Affiliation

Department of Biological Sciences, Northeast Structural Genomics Consortium, Columbia University, New York, New York 10027, USA.

Macromolecule Content

Total Structure Weight: 44.57 kDa
Atom Count: 3,377
Modeled Residue Count: 372
Deposited Residue Count: 388
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Retinoblastoma-binding protein 9	A, B	194	Homo sapiens	Mutation(s): 0 Gene Names: RBBP9, BOG, RBBP10 EC: 3.1
UniProt & NIH Common Fund Data Resources
Find proteins for O75884 (Homo sapiens) Explore O75884 Go to UniProtKB: O75884
PHAROS: O75884 GTEx: ENSG00000089050
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	O75884
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.72 Å
R-Value Free: 0.203 (Depositor), 0.203 (DCC)
R-Value Work: 0.183 (Depositor), 0.183 (DCC)
R-Value Observed: 0.183 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 37.081	α = 90
b = 130.34	β = 115.87
c = 39.047	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
HKL-2000	data collection
HKL-2000	data reduction
HKL-2000	data scaling
SHELX	phasing
SOLVE	phasing
RESOLVE	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2007-08-14

Deposition Author(s):

Northeast Structural Genomics Consortium (NESG)

Revision History (Full details and data files)

Version 1.0: 2007-08-14
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2024-11-20
Changes: Data collection, Database references, Derived calculations, Structure summary