4TTK

Racemic structure of Sunflower Trypsin Inhibitor-1 (SFTI-1)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.25 Å
  • R-Value Free: 0.276 
  • R-Value Work: 0.262 
  • R-Value Observed: 0.264 

wwPDB Validation   3D Report Full Report


This is version 1.5 of the entry. See complete history


Literature

Racemic and Quasi-Racemic X-ray Structures of Cyclic Disulfide-Rich Peptide Drug Scaffolds.

Wang, C.K.King, G.J.Northfield, S.E.Ojeda, P.G.Craik, D.J.

(2014) Angew Chem Int Ed Engl 53: 11236-11241

  • DOI: https://doi.org/10.1002/anie.201406563
  • Primary Citation of Related Structures:  
    4TTK, 4TTL, 4TTM, 4TTN, 4TTO

  • PubMed Abstract: 

    Cyclic disulfide-rich peptides have exceptional stability and are promising frameworks for drug design. We were interested in obtaining X-ray structures of these peptides to assist in drug design applications, but disulfide-rich peptides can be notoriously difficult to crystallize. To overcome this limitation, we chemically synthesized the L- and D-forms of three prototypic cyclic disulfide-rich peptides: SFTI-1 (14-mer with one disulfide bond), cVc1.1 (22-mer with two disulfide bonds), and kB1 (29-mer with three disulfide bonds) for racemic crystallization studies. Facile crystal formation occurred from a racemic mixture of each peptide, giving structures solved at resolutions from 1.25 Å to 1.9 Å. Additionally, we obtained the quasi-racemic structures of two mutants of kB1, [G6A]kB1, and [V25A]kB1, which were solved at a resolution of 1.25 Å and 2.3 Å, respectively. The racemic crystallography approach appears to have broad utility in the structural biology of cyclic peptides.


  • Organizational Affiliation

    Institute for Molecular Bioscience, The University of Queensland, Brisbane, Qld, 4072 (Australia).


Macromolecules

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Sunflower Trypsin Inhibitor-1 (SFTI-1) (D-form)14Helianthus annuusMutation(s): 0 
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.25 Å
  • R-Value Free: 0.276 
  • R-Value Work: 0.262 
  • R-Value Observed: 0.264 
  • Space Group: P -3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 42.64α = 90
b = 42.64β = 90
c = 12.965γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
CrystalCleardata reduction
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Australian Research Council (ARC)AustraliaLP110200213
National Health and Medical Research Council (NHMRC, Australia)Australia546578
National Health and Medical Research Council (NHMRC, Australia)AustraliaAPP1026501

Revision History  (Full details and data files)

  • Version 1.0: 2014-09-10
    Type: Initial release
  • Version 1.1: 2014-10-22
    Changes: Database references
  • Version 1.2: 2017-09-06
    Changes: Author supporting evidence, Data collection, Database references, Derived calculations, Other, Source and taxonomy
  • Version 1.3: 2020-01-01
    Changes: Author supporting evidence
  • Version 1.4: 2023-12-27
    Changes: Data collection, Database references, Derived calculations, Refinement description
  • Version 1.5: 2024-11-06
    Changes: Structure summary