Download MendeleyCrystal Structure of Uncharacterized Cupredoxin-like domain protein from Bacillus anthracis
Kim, Y., Maltseva, N., Shatsman, S., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)To be published.
5TK2 | pdb_00005tk2
Crystal Structure of Uncharacterized Cupredoxin-like domain protein from Bacillus anthracis
- PDB DOI: https://doi.org/10.2210/pdb5TK2/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Bacillus anthracis str. Ames
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2016-10-06 Released: 2016-11-16
- Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.40 Å
- R-Value Free: 0.166 (Depositor), 0.170 (DCC)
- R-Value Work: 0.135 (Depositor), 0.140 (DCC)
- R-Value Observed: 0.136 (Depositor)
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.7 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Cytochrome B | 100 | Bacillus anthracis str. Ames | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for A0A6L7H6L8 (Bacillus anthracis) Explore A0A6L7H6L8 Go to UniProtKB: A0A6L7H6L8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A6L7H6L8 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MLT Query on MLT | F [auth A], I [auth B], M [auth D] | D-MALATE C4 H6 O5 BJEPYKJPYRNKOW-UWTATZPHSA-N |  | ||
| CD Query on CD | E [auth A], G [auth B], J [auth C], K [auth D] | CADMIUM ION Cd WLZRMCYVCSSEQC-UHFFFAOYSA-N |  | ||
| EDO Query on EDO | H [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| FMT Query on FMT | L [auth D] | FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.40 Å
- R-Value Free: 0.166 (Depositor), 0.170 (DCC)
- R-Value Work: 0.135 (Depositor), 0.140 (DCC)
- R-Value Observed: 0.136 (Depositor)
Diffraction Data: https://doi.org/10.18430/m35tk2
Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 65.226 | α = 90 |
| b = 58.023 | β = 90 |
| c = 108.796 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| HKL-3000 | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2016-11-16 Deposition Author(s): Kim, Y., Maltseva, N., Shatsman, S., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | -- |
Revision History (Full details and data files)
- Version 1.0: 2016-11-16
Type: Initial release - Version 1.1: 2016-12-14
Changes: Database references, Structure summary - Version 1.2: 2017-02-08
Changes: Database references, Structure summary - Version 1.3: 2017-09-27
Changes: Author supporting evidence - Version 1.4: 2019-12-04
Changes: Author supporting evidence - Version 1.5: 2023-10-04
Changes: Data collection, Database references, Derived calculations, Refinement description - Version 1.6: 2023-11-15
Changes: Data collection - Version 1.7: 2024-11-06
Changes: Structure summary
