5UTX | pdb_00005utx

Crystal structure of thioredoxin-disulfide reductase from Vibrio vulnificus CMCP6 - apo form


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.46 Å
  • R-Value Free: 
    0.254 (Depositor), 0.250 (DCC) 
  • R-Value Work: 
    0.200 (Depositor), 0.200 (DCC) 
  • R-Value Observed: 
    0.202 (Depositor) 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

Structural genomics of bacterial drug targets: Application of a high-throughput pipeline to solve 58 protein structures from pathogenic and related bacteria.

Inniss, N.L.Minasov, G.Chang, C.Tan, K.Kim, Y.Maltseva, N.Stogios, P.Filippova, E.Michalska, K.Osipiuk, J.Jaroszewki, L.Godzik, A.Savchenko, A.Joachimiak, A.Anderson, W.F.Satchell, K.J.F.

(2025) Microbiol Resour Announc : e0020025-e0020025


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Thioredoxin reductase
A, B
319Vibrio vulnificus CMCP6Mutation(s): 0 
Gene Names: VV1455
EC: 1.8.1.9
UniProt
Find proteins for Q7MLH2 (Vibrio vulnificus (strain YJ016))
Explore Q7MLH2 
Go to UniProtKB:  Q7MLH2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ7MLH2
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.46 Å
  • R-Value Free:  0.254 (Depositor), 0.250 (DCC) 
  • R-Value Work:  0.200 (Depositor), 0.200 (DCC) 
  • R-Value Observed: 0.202 (Depositor) 
Space Group: P 31 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 120.031α = 90
b = 120.031β = 90
c = 79.185γ = 120
Software Package:
Software NamePurpose
SCALEPACKdata scaling
PHENIXrefinement
PDB_EXTRACTdata extraction
HKL-3000data reduction
HKL-3000phasing

Structure Validation

View Full Validation Report



Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2017-02-22
    Type: Initial release
  • Version 1.1: 2017-08-23
    Changes: Data collection
  • Version 1.2: 2023-10-04
    Changes: Data collection, Database references, Refinement description
  • Version 1.3: 2024-10-30
    Changes: Structure summary
  • Version 1.4: 2025-06-18
    Changes: Database references