Download MendeleyCrystal structure of adenine phosphoribosyltransferase from Yersinia pseudotuberculosis
Pavithra, G.C., Ramagopal, U.A.To be published.
5ZMI
Crystal structure of APRT from Y. pseudotuberculosis in complex with adenine.
- PDB DOI: https://doi.org/10.2210/pdb5ZMI/pdb
- Classification: TRANSFERASE
- Organism(s): Yersinia pseudotuberculosis IP 32953
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2018-04-03 Released: 2019-04-10
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 Å
- R-Value Free: 0.228
- R-Value Work: 0.185
- R-Value Observed: 0.188
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Adenine phosphoribosyltransferase | 187 | Yersinia pseudotuberculosis IP 32953 | Mutation(s): 0 Gene Names: YPTB0991 EC: 2.4.2.7 |  | |
UniProt | |||||
Find proteins for Q66DQ2 (Yersinia pseudotuberculosis serotype I (strain IP32953)) Explore Q66DQ2 Go to UniProtKB: Q66DQ2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q66DQ2 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ADE (Subject of Investigation/LOI) Query on ADE | B [auth A] | ADENINE C5 H5 N5 GFFGJBXGBJISGV-UHFFFAOYSA-N |  | ||
| NA Query on NA | C [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 Å
- R-Value Free: 0.228
- R-Value Work: 0.185
- R-Value Observed: 0.188
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 58.958 | α = 90 |
| b = 78.65 | β = 115.2 |
| c = 53.679 | γ = 90 |
| Software Name | Purpose |
|---|---|
| Aimless | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| MOSFLM | data reduction |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2019-04-10 Deposition Author(s): Pavithra, G.C., Fox, G.C., Ramagopal, U.A.
Revision History (Full details and data files)
- Version 1.0: 2019-04-10
Type: Initial release - Version 1.1: 2023-11-22
Changes: Data collection, Database references, Refinement description
