5ZS8

Acetylation of lysine 100 of Phosphoglycerate mutase 1 complexed with KH_ol


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.220 
  • R-Value Work: 0.179 
  • R-Value Observed: 0.181 

wwPDB Validation 3D Report Full Report



Literature

Acetylation of lysine 100 of Phosphoglycerate mutase 1 complexed with KH_ol

Jiang, L.L.Zhou, L.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Phosphoglycerate mutase 1B234Homo sapiensMutation(s): 0 
Gene Names: PGAM1PGAMACDABP0006
EC: 5.4.2.11 (PDB Primary Data), 5.4.2.4 (PDB Primary Data)
Find proteins for P18669 (Homo sapiens)
Explore P18669 
Go to UniProtKB:  P18669
NIH Common Fund Data Resources
PHAROS  P18669
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Phosphoglycerate mutase 1C240Homo sapiensMutation(s): 0 
Gene Names: PGAM1PGAMACDABP0006
EC: 5.4.2.11 (PDB Primary Data), 5.4.2.4 (PDB Primary Data)
Find proteins for P18669 (Homo sapiens)
Explore P18669 
Go to UniProtKB:  P18669
NIH Common Fund Data Resources
PHAROS  P18669
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
9JF
Query on 9JF

Download CCD File 
C
N-(3,4-dihydroxy-9,10-dioxo-9,10-dihydroanthracen-2-yl)-2-hydroxybenzene-1-sulfonamide
C20 H13 N O7 S
YZRZWZMBKZDBMJ-UHFFFAOYSA-N
 Ligand Interaction
MES
Query on MES

Download CCD File 
C
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
C6 H13 N O4 S
SXGZJKUKBWWHRA-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

Download CCD File 
B
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Modified Residues  2 Unique
IDChainsTypeFormula2D DiagramParent
ALY
Query on ALY
CL-PEPTIDE LINKINGC8 H16 N2 O3LYS
NEP
Query on NEP
CL-PEPTIDE LINKINGC6 H10 N3 O5 PHIS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.220 
  • R-Value Work: 0.179 
  • R-Value Observed: 0.181 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 78.743α = 90
b = 83.101β = 90
c = 100.368γ = 90
Software Package:
Software NamePurpose
HKL-2000data scaling
PHENIXrefinement
PDB_EXTRACTdata extraction
HKL-2000data collection
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2018-04-28 
  • Released Date: 2019-05-22 
  • Deposition Author(s): Jiang, L.L., Zhou, L.

Funding OrganizationLocationGrant Number
National Natural Science Foundation of ChinaChina21472026

Revision History 

  • Version 1.0: 2019-05-22
    Type: Initial release