6FXC

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.76 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

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This is version 1.2 of the entry. See complete history


Literature

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus.

Matzov, D.Aibara, S.Basu, A.Zimmerman, E.Bashan, A.Yap, M.F.Amunts, A.Yonath, A.E.

(2017) Nat Commun 8: 723-723

  • DOI: 10.1038/s41467-017-00753-8
  • Primary Citation of Related Structures:  
    6FXC, 5NGM

  • PubMed Abstract: 
  • Formation of 100S ribosome dimer is generally associated with translation suppression in bacteria. Trans-acting factors ribosome modulation factor (RMF) and hibernating promoting factor (HPF) were shown to directly mediate this process in E. coli. Gram-positive S ...

    Formation of 100S ribosome dimer is generally associated with translation suppression in bacteria. Trans-acting factors ribosome modulation factor (RMF) and hibernating promoting factor (HPF) were shown to directly mediate this process in E. coli. Gram-positive S. aureus lacks an RMF homolog and the structural basis for its 100S formation was not known. Here we report the cryo-electron microscopy structure of the native 100S ribosome from S. aureus, revealing the molecular mechanism of its formation. The structure is distinct from previously reported analogs and relies on the HPF C-terminal extension forming the binding platform for the interactions between both of the small ribosomal subunits. The 100S dimer is formed through interactions between rRNA h26, h40, and protein uS2, involving conformational changes of the head as well as surface regions that could potentially prevent RNA polymerase from docking to the ribosome.Under conditions of nutrient limitation, bacterial ribosomes undergo dimerization, forming a 100S complex that is translationally inactive. Here the authors present the structural basis for formation of the 100S complexes in Gram-positive bacteria, shedding light on the mechanism of translation suppression by the ribosome-silencing factors.


    Organizational Affiliation

    Faculty of Chemistry, Department of Structural Biology, The Weizmann Institute of Science, Rehovot, 7610001, Israel. ada.yonath@weizmann.ac.il.



Macromolecules

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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S2 AbBb226Staphylococcus aureus RF122Mutation(s): 0 
Gene Names: rpsBSAB1118
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S3 AcBc202Staphylococcus aureus RF122Mutation(s): 0 
Gene Names: rpsCSAB2116c
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S4 AdBd198Staphylococcus aureus RF122Mutation(s): 0 
Gene Names: rpsDSAB1578
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S5 AeBe156Staphylococcus aureus RF122Mutation(s): 0 
Gene Names: rpsESAB2105c
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Entity ID: 6
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S6 AfBf95Staphylococcus aureus RF122Mutation(s): 0 
Gene Names: rpsFSAB0316
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Entity ID: 7
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S7 AgBg152Staphylococcus aureusMutation(s): 0 
Gene Names: 
rpsGBN1321_130031BSZ10_09240BTN44_09955C7P97_07640CSC87_01220DD547_00517DDL17_09565DQV20_06035DQV53_03165E3A28_05925E3K14_02845E4U00_00165EP54_12970EQ90_07140ERS072840_00740ERS140147_01024FA040_12045FVP29_15915G0V24_10245G0X12_08070G0X27_04300G0Y02_09285G0Z08_06095G0Z18_11645G6W67_09450G6W97_09815G6X24_14640G6X31_07075G6X35_00485G6Y10_11920G6Y24_14965G6Y28_08700G6Y30_10135GF545_06540GF559_03095GIX97_12565GO677_00090GO706_14525GO746_14875GO788_10365GO793_06925GO803_06745GO805_00570GO810_06025GO821_12160GO894_02300GO915_05500GO941_07980GO942_12745HMPREF2819_12085HMPREF3211_01392M1K003_2007NCTC10654_00643NCTC10988_00737NCTC5664_00097NCTC6133_00647NCTC7878_01164NCTC9944_00616RK64_03355SAMEA1029528_00829SAMEA1029547_01766SAMEA1029553_01995SAMEA1469856_00032SAMEA1469884_00902SAMEA1531680_01404SAMEA1531701_00884SAMEA1964876_02165SAMEA1965205_02350SAMEA1966505_02308SAMEA1969349_00930SAMEA1969845_01595SAMEA1971706_02279SAMEA1972827_00721SAMEA2076212_00775SAMEA2076218_00956SAMEA2076220_00578SAMEA2076226_00256SAMEA2076463_02160SAMEA2076464_02173SAMEA2076470_02148SAMEA2076472_02181SAMEA2076478_02185SAMEA2076480_02178SAMEA2076481_02326SAMEA2076743_02185SAMEA2076745_02269SAMEA2076746_02226SAMEA2076747_02285SAMEA2076749_01268SAMEA2076751_02203SAMEA2076752_02221SAMEA2076755_02184SAMEA2076756_02254SAMEA2076758_02264SAMEA2076759_02189SAMEA2076761_01202SAMEA2076762_02043SAMEA2076763_01953SAMEA2076764_02229SAMEA2076765_02225SAMEA2077023_02222SAMEA2077025_02184SAMEA2077027_02179SAMEA2077029_02196SAMEA2077031_01222SAMEA2077034_02077SAMEA2077035_02259SAMEA2077039_02230SAMEA2077040_02187SAMEA2077041_02226SAMEA2077044_02185SAMEA2077045_02208SAMEA2077046_02149SAMEA2077293_02239SAMEA2077294_02180SAMEA2077295_02294SAMEA2077297_02179SAMEA2077300_02305SAMEA2077301_02272SAMEA2077302_02178SAMEA2077303_02142SAMEA2077307_02135SAMEA2077832_02279SAMEA2078252_02224SAMEA2078256_02187SAMEA2078307_02240SAMEA2078308_02137SAMEA2078553_02178SAMEA2078560_02335SAMEA2078569_02365SAMEA2078570_02252SAMEA2078572_02231SAMEA2078824_02355SAMEA2078837_02234SAMEA2079048_02246SAMEA2079051_02209SAMEA2079277_01676SAMEA2079291_02388SAMEA2079503_02268SAMEA2079507_02283SAMEA2079512_02319SAMEA2079517_02263SAMEA2079724_00031SAMEA2079727_00905SAMEA2079728_01043SAMEA2079732_00497SAMEA2079742_00767SAMEA2079946_00690SAMEA2079949_00673SAMEA2079951_00031SAMEA2079952_00498SAMEA2079957_01043SAMEA2079958_00721SAMEA2079960_00495SAMEA2079961_00031SAMEA2079968_00452SAMEA2080329_00256SAMEA2080330_00031SAMEA2080334_00767SAMEA2080433_00819SAMEA2080812_02313SAMEA2080898_01649SAMEA2080900_01118SAMEA2080904_02084SAMEA2080913_02202SAMEA2081043_02221SAMEA2081053_02202SAMEA2081054_02185SAMEA2081055_02266SAMEA2081060_01303SAMEA2081211_02159SAMEA2081213_02312SAMEA2081218_00311SAMEA2081341_00256SAMEA2081342_00450SAMEA2081349_00774SAMEA2081359_00256SAMEA2081362_01022SAMEA2081468_02196SAMEA2081474_02333SAMEA2081475_02184SAMEA2081476_02168SAMEA2081479_02311SAMEA2081480_01313SAMEA2081560_02192SAMEA2081561_02170SAMEA2081564_02199SAMEA2081567_02187SAMEA2081568_02284SAMEA2081569_02190SAMEA2081570_02195SAMEA2081571_02185SAMEA2081572_02184SAMEA2081573_02163SAMEA2081575_02193SAMEA2081577_02163SAMEA2081578_02180SAMEA2081579_02183SAMEA2081581_02096SAMEA2081582_00026SAMEA2081673_00773SAMEA2081674_00772SAMEA958766_02500SAMEA958770_02367SAMEA958772_02287SAMEA958778_00860SAMEA958779_01657SAMEA958785_02332SAMEA958793_02349SAMEA958798_02320SAMEA958804_02459SAMEA958810_02129SAMEA958836_02351SAMEA958838_01912SAMEA958845_02363SAMEA958846_00856SAMEA958848_02147SAMEA958855_02105SAMEA958858_02123SAMEA958870_00786SAMEA958898_01762SAMEA958906_02052SAMEA958924_02379SAMEA958925_01654SAMEA958951_02503SAMEA958953_02391SAMEA958961_01896SAMEA958979_02348SAMEA958987_02333SAMEA958995_02255SAST44_00569SAST45_00581

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Entity ID: 8
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S8 AhBh131Staphylococcus aureus RF122Mutation(s): 0 
Gene Names: rpsHSAB2108c
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Entity ID: 9
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S9 AiBi127Staphylococcus aureusMutation(s): 0 
Gene Names: rpsIBTN44_13505EP54_02240EQ90_01125HMPREF2819_01050SAST44_03731SAST45_04699
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Entity ID: 10
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30S ribosomal protein S10 AjBj97Staphylococcus aureus RF122Mutation(s): 0 
Gene Names: rpsJSAB2123c
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Entity ID: 11
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30S ribosomal protein S11 AkBk114Staphylococcus aureus RF122Mutation(s): 0 
Gene Names: rpsKSAB2098c
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Entity ID: 12
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30S ribosomal protein S12 AlBl135Staphylococcus aureusMutation(s): 0 
Gene Names: rpsLHMPREF3211_01391
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Entity ID: 13
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30S ribosomal protein S13 AmBm121Staphylococcus aureus RF122Mutation(s): 0 
Gene Names: rpsMSAB2099c
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Entity ID: 14
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S14 type Z AnBn60Staphylococcus aureus RF122Mutation(s): 0 
Gene Names: rpsZrpsN1SAB2109c
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Entity ID: 15
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S15 AoBo88Staphylococcus aureus RF122Mutation(s): 0 
Gene Names: rpsOSAB1135
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Entity ID: 16
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S16 ApBp89Staphylococcus aureus RF122Mutation(s): 0 
Gene Names: rpsPSAB1102
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Entity ID: 17
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S17 AqBq80Staphylococcus aureus RF122Mutation(s): 0 
Gene Names: rpsQSAB2113c
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Entity ID: 18
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S18 ArBr54Staphylococcus aureusMutation(s): 0 
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Entity ID: 19
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S19 AsBs80Staphylococcus aureusMutation(s): 0 
Gene Names: rpsSHMPREF3211_01571
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Entity ID: 20
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30S ribosomal protein S20 AtBt81Staphylococcus aureus RF122Mutation(s): 0 
Gene Names: rpsTSAB1458
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Entity ID: 21
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30S ribosomal protein S21 AuBu52Staphylococcus aureus RF122Mutation(s): 0 
Gene Names: rpsUSAB1447c
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Entity ID: 22
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Ribosome hibernation promotion factor AvBv190Staphylococcus aureus RF122Mutation(s): 0 
Gene Names: hpfSAB0704
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Entity ID: 25
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50S ribosomal protein L2 ACBC274Staphylococcus aureus RF122Mutation(s): 0 
Gene Names: rplBSAB2119c
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Entity ID: 26
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50S ribosomal protein L3 ADBD215Staphylococcus aureus RF122Mutation(s): 0 
Gene Names: rplCSAB2122c
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Entity ID: 27
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50S ribosomal protein L4 AEBE206Staphylococcus aureus RF122Mutation(s): 0 
Gene Names: rplDSAB2121c
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Entity ID: 28
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50S ribosomal protein L5 AFBF175Staphylococcus aureus RF122Mutation(s): 0 
Gene Names: rplESAB2110c
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Entity ID: 29
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50S ribosomal protein L6 AGBG175Staphylococcus aureus RF122Mutation(s): 0 
Gene Names: rplFSAB2107c
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Entity ID: 30
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50S ribosomal protein L13 AHBH145Staphylococcus aureus RF122Mutation(s): 0 
Gene Names: rplMSAB2091c
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Entity ID: 31
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50S ribosomal protein L14 AIBI122Staphylococcus aureus RF122Mutation(s): 0 
Gene Names: rplNSAB2112c
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Entity ID: 32
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50S ribosomal protein L15 AJBJ146Staphylococcus aureus RF122Mutation(s): 0 
Gene Names: rplOSAB2103c
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Entity ID: 33
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50S ribosomal protein L16 AKBK137Staphylococcus aureus RF122Mutation(s): 0 
Gene Names: rplPSAB2115c
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Entity ID: 34
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50S ribosomal protein L17 ALBL120Staphylococcus aureus RF122Mutation(s): 0 
Gene Names: rplQSAB2096c
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Entity ID: 35
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50S ribosomal protein L18 AMBM119Staphylococcus aureusMutation(s): 0 
Gene Names: 
rplRBN1321_380066BTN44_13590C7P97_04065CSC87_02290DD547_02271DDL17_01380DQV20_00505DQV53_12935E3A28_11205E3K14_11925EP54_02155EQ90_01210ERS072840_01140FA040_01530FVP29_08980G0V24_08060G0X12_08305G0X27_07080G0Y02_02885G0Z18_08015G6W67_02245G6W97_08415G6X24_00140G6X31_08665G6X35_06950G6Y10_08450G6Y24_08820G6Y28_10990G6Y30_07090GF545_07570GF559_06035GIX97_07565GO677_05785GO706_04040GO746_01035GO788_09415GO793_01695GO803_10675GO805_15025GO810_02140GO821_04150GO894_08885GO915_00080GO941_09030GO942_01070HMPREF2819_00965HMPREF3211_01559M1K003_0777NCTC10654_02406NCTC10988_02628NCTC5664_01678NCTC6133_03024NCTC9944_02390RK64_11900SAMEA1029528_02024SAMEA1029547_01422SAMEA1029553_01106SAMEA1469856_00806SAMEA1469884_01240SAMEA1531680_01581SAMEA1531701_01522SAMEA1964876_00438SAMEA1965205_00258SAMEA1966505_00258SAMEA1969349_01220SAMEA1969845_00699SAMEA1971706_00620SAMEA1972827_01267SAMEA2076212_00373SAMEA2076218_01268SAMEA2076220_00997SAMEA2076226_01613SAMEA2076463_01011SAMEA2076464_01010SAMEA2076470_00639SAMEA2076472_00565SAMEA2076478_00692SAMEA2076480_00954SAMEA2076481_01607SAMEA2076743_01233SAMEA2076745_00707SAMEA2076746_01292SAMEA2076747_00967SAMEA2076749_00567SAMEA2076751_00070SAMEA2076752_01092SAMEA2076755_00566SAMEA2076756_00920SAMEA2076758_00731SAMEA2076759_00258SAMEA2076761_00258SAMEA2076762_00687SAMEA2076763_01349SAMEA2076764_00535SAMEA2076765_01995SAMEA2077023_00724SAMEA2077025_00258SAMEA2077027_00258SAMEA2077029_00051SAMEA2077031_00052SAMEA2077034_00258SAMEA2077035_01598SAMEA2077039_01095SAMEA2077040_01546SAMEA2077041_00534SAMEA2077044_00840SAMEA2077045_00258SAMEA2077046_00053SAMEA2077293_00069SAMEA2077294_01359SAMEA2077295_00070SAMEA2077297_01109SAMEA2077300_00258SAMEA2077301_00069SAMEA2077302_00070SAMEA2077303_00258SAMEA2077307_00258SAMEA2077832_00069SAMEA2078252_00257SAMEA2078256_00866SAMEA2078307_00258SAMEA2078308_01006SAMEA2078553_01507SAMEA2078558_01213SAMEA2078560_01669SAMEA2078569_00374SAMEA2078570_00069SAMEA2078572_00258SAMEA2078824_01010SAMEA2078837_00071SAMEA2079048_00257SAMEA2079051_00438SAMEA2079277_00773SAMEA2079291_00671SAMEA2079503_01091SAMEA2079507_00721SAMEA2079512_01002SAMEA2079517_00790SAMEA2079724_01597SAMEA2079727_01927SAMEA2079728_01683SAMEA2079732_01373SAMEA2079742_00592SAMEA2079946_01239SAMEA2079949_01535SAMEA2079951_01629SAMEA2079952_01680SAMEA2079957_01668SAMEA2079958_01372SAMEA2079960_00144SAMEA2079961_00803SAMEA2079968_01581SAMEA2080329_01783SAMEA2080330_00725SAMEA2080334_00565SAMEA2080433_01356SAMEA2080812_01372SAMEA2080898_00070SAMEA2080900_01213SAMEA2080904_00360SAMEA2080913_00070SAMEA2081043_00537SAMEA2081053_00257SAMEA2081054_01345SAMEA2081055_00258SAMEA2081060_00258SAMEA2081211_00494SAMEA2081213_00788SAMEA2081218_01778SAMEA2081341_01656SAMEA2081342_01328SAMEA2081349_01622SAMEA2081359_01676SAMEA2081362_00069SAMEA2081468_01459SAMEA2081474_01209SAMEA2081475_01033SAMEA2081476_01023SAMEA2081479_00821SAMEA2081480_00072SAMEA2081560_00438SAMEA2081561_00359SAMEA2081564_00052SAMEA2081567_00258SAMEA2081568_00070SAMEA2081569_01622SAMEA2081570_00054SAMEA2081571_00052SAMEA2081572_00438SAMEA2081573_01404SAMEA2081575_01297SAMEA2081577_01305SAMEA2081578_00988SAMEA2081579_00069SAMEA2081581_00437SAMEA2081582_00695SAMEA2081673_01771SAMEA2081674_01308SAMEA958766_01465SAMEA958770_01485SAMEA958772_01683SAMEA958778_01174SAMEA958779_00446SAMEA958785_01470SAMEA958793_01510SAMEA958798_00741SAMEA958804_01671SAMEA958810_01103SAMEA958836_01743SAMEA958838_00438SAMEA958845_01442SAMEA958846_01173SAMEA958848_00428SAMEA958855_00836SAMEA958858_01746SAMEA958870_00125SAMEA958898_00125SAMEA958906_00669SAMEA958924_01520SAMEA958925_01945SAMEA958951_01795SAMEA958953_01717SAMEA958961_01394SAMEA958979_01429SAMEA958987_00857SAMEA958995_01412SAST44_02495SAST45_02480

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Entity ID: 36
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L19 ANBN114Staphylococcus aureus RF122Mutation(s): 0 
Gene Names: rplSSAB1105
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Entity ID: 37
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L20 AOBO116Staphylococcus aureus RF122Mutation(s): 0 
Gene Names: rplTSAB1538c
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Entity ID: 38
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L21 APBP102Staphylococcus aureus RF122Mutation(s): 0 
Gene Names: rplUSAB1516c
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Entity ID: 39
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L22 AQBQ112Staphylococcus aureus RF122Mutation(s): 0 
Gene Names: rplVSAB2117c
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Entity ID: 40
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L23 ARBR89Staphylococcus aureus RF122Mutation(s): 0 
Gene Names: rplWSAB2120c
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Entity ID: 41
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L24 ASBS103Staphylococcus aureus RF122Mutation(s): 0 
Gene Names: rplXSAB2111c
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Entity ID: 42
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L25 ATBT94Staphylococcus aureusMutation(s): 0 
Gene Names: rplYctcHMPREF3211_00359
Find proteins for A0A133Q8Z9 (Staphylococcus aureus)
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Entity ID: 43
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L27 AUBU82Staphylococcus aureusMutation(s): 0 
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Entity ID: 44
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L28 AVBV58Staphylococcus aureus RF122Mutation(s): 0 
Gene Names: rpmBSAB1088c
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Entity ID: 45
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L29 AWBW67Staphylococcus aureus RF122Mutation(s): 0 
Gene Names: rpmCSAB2114c
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Entity ID: 46
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L30 AXBX58Staphylococcus aureus RF122Mutation(s): 0 
Gene Names: rpmDSAB2104c
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Entity ID: 47
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L31 type B AYBY59Staphylococcus aureus RF122Mutation(s): 0 
Gene Names: rpmE2SAB2004c
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Entity ID: 48
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L32 AZBZ48Staphylococcus aureusMutation(s): 0 
Gene Names: rpmFBSZ10_12860
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Entity ID: 49
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L33 A1B147Staphylococcus aureusMutation(s): 0 
Gene Names: 
rpmG2rpmGrpmG1rpmG2_1rpmG_1rpmGABN1321_250027BSZ10_06805BTN44_05930C7P97_11650CSC87_10725DD547_01365DDL17_07630DQV20_09855DQV53_07180E3A28_01830E3K14_06720E4U00_04345EP54_12360EQ90_07500ERS072840_02602ERS140147_01724FA040_09090FVP29_08200G0V24_10920G0X12_06395G0X27_01400G0Y02_07325G0Z08_11325G0Z18_08970G6W67_08765G6W97_09420G6X24_11985G6X31_11775G6X35_16015G6Y10_05190G6Y24_03905G6Y28_04195G6Y30_13335GF545_11545GF559_10300GIX97_02785GO677_03575GO706_08640GO746_10055GO788_02820GO793_05475GO803_14560GO805_11305GO810_04085GO821_06495GO894_02730GO915_13275GO941_07600GO942_07900HMPREF2819_03180HMPREF3211_00887M1K003_0180NCTC10654_01387NCTC10988_01574NCTC5664_02098NCTC6133_01708NCTC7878_01730NCTC9944_01348RK64_07170SAMEA1029528_00082SAMEA1029547_02248SAMEA1029553_02146SAMEA1469856_01108SAMEA1469884_02544SAMEA1531680_02486SAMEA1531701_02596SAMEA1964876_01897SAMEA1965205_01884SAMEA1966505_01812SAMEA1969349_01890SAMEA1969845_01415SAMEA1971706_01928SAMEA1972827_01067SAMEA2076212_01464SAMEA2076218_01068SAMEA2076220_01693SAMEA2076226_00606SAMEA2076463_02106SAMEA2076464_01755SAMEA2076470_02067SAMEA2076472_02022SAMEA2076478_02101SAMEA2076480_01750SAMEA2076481_02268SAMEA2076743_02105SAMEA2076745_02189SAMEA2076746_01749SAMEA2076747_01714SAMEA2076749_01909SAMEA2076751_01703SAMEA2076752_02141SAMEA2076755_01597SAMEA2076756_02196SAMEA2076758_02206SAMEA2076759_01650SAMEA2076761_01793SAMEA2076762_02217SAMEA2076763_02244SAMEA2076764_01836SAMEA2076765_02167SAMEA2077023_02142SAMEA2077025_02047SAMEA2077027_01845SAMEA2077029_02142SAMEA2077031_01853SAMEA2077034_01868SAMEA2077035_01745SAMEA2077039_02146SAMEA2077040_02103SAMEA2077041_02142SAMEA2077044_01847SAMEA2077045_01877SAMEA2077046_01662SAMEA2077293_01922SAMEA2077294_02122SAMEA2077295_01849SAMEA2077297_01684SAMEA2077300_02142SAMEA2077301_01771SAMEA2077302_02040SAMEA2077303_01746SAMEA2077307_01976SAMEA2077832_02199SAMEA2078252_01888SAMEA2078256_02054SAMEA2078307_01930SAMEA2078308_01980SAMEA2078553_01789SAMEA2078558_02151SAMEA2078560_02277SAMEA2078569_01875SAMEA2078570_02194SAMEA2078572_01965SAMEA2078824_02100SAMEA2078837_01896SAMEA2079048_02035SAMEA2079051_01729SAMEA2079277_01237SAMEA2079291_02292SAMEA2079503_02214SAMEA2079507_01872SAMEA2079512_01913SAMEA2079517_01709SAMEA2079724_01278SAMEA2079727_01067SAMEA2079728_01380SAMEA2079732_01070SAMEA2079742_01340SAMEA2079946_01039SAMEA2079949_01024SAMEA2079951_01232SAMEA2079952_01072SAMEA2079957_01155SAMEA2079958_01120SAMEA2079960_01069SAMEA2079961_00654SAMEA2079968_01203SAMEA2080329_01122SAMEA2080330_01432SAMEA2080334_01659SAMEA2080433_01206SAMEA2080812_01900SAMEA2080898_00986SAMEA2080900_02163SAMEA2080904_02004SAMEA2080913_02118SAMEA2081043_01895SAMEA2081053_01967SAMEA2081054_01946SAMEA2081055_02182SAMEA2081060_00959SAMEA2081211_01746SAMEA2081213_01760SAMEA2081218_00943SAMEA2081341_01282SAMEA2081342_01075SAMEA2081349_01160SAMEA2081359_01086SAMEA2081362_01486SAMEA2081468_02142SAMEA2081474_01742SAMEA2081475_02098SAMEA2081476_01639SAMEA2081479_02153SAMEA2081480_01912SAMEA2081560_01863SAMEA2081561_01773SAMEA2081564_01804SAMEA2081567_01847SAMEA2081568_01801SAMEA2081569_01756SAMEA2081570_01858SAMEA2081571_02101SAMEA2081572_01696SAMEA2081573_02083SAMEA2081575_02139SAMEA2081577_02083SAMEA2081578_01752SAMEA2081579_01857SAMEA2081581_01963SAMEA2081582_02015SAMEA2081673_01160SAMEA2081674_01158SAMEA958766_00911SAMEA958770_01227SAMEA958772_01308SAMEA958778_00054SAMEA958779_01766SAMEA958785_00930SAMEA958793_01136SAMEA958798_00919SAMEA958804_00938SAMEA958810_01951SAMEA958836_00383SAMEA958838_02206SAMEA958845_01059SAMEA958846_01606SAMEA958848_02634SAMEA958855_01698SAMEA958858_02552SAMEA958870_01425SAMEA958898_02249SAMEA958906_01515SAMEA958924_01138SAMEA958925_01160SAMEA958951_00958SAMEA958953_01187SAMEA958961_01660SAMEA958979_00886SAMEA958987_01993SAMEA958995_00635SAST44_01400SAST45_01436

Find proteins for A0A077V2P0 (Staphylococcus schweitzeri)
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Entity ID: 50
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L34 A2B243Staphylococcus aureus RF122Mutation(s): 0 
Gene Names: rpmHSAB2590c
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Entity ID: 51
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L35 A3B364Staphylococcus aureus RF122Mutation(s): 0 
Gene Names: rpmISAB1539c
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Entity ID: 52
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L36 A4B437Staphylococcus aureusMutation(s): 0 
Gene Names: 
rpmJBTN44_13555C7P97_04030CSC87_02325DD547_02264DDL17_01345DQV20_00470DQV53_12900E3A28_11240E3K14_11890E4U00_12525EP54_02190EQ90_01175ERS072840_01133ERS140147_00615FA040_01495FVP29_00660G0V24_08095G0X12_08270G0X27_07115G0Y02_02920G0Z08_03720G0Z18_07980G6W67_02280G6W97_08450G6X24_00105G6X31_08700G6X35_06915G6Y10_08485G6Y24_08785G6Y28_07600G6Y30_07125GF545_07535GF559_06000GIX97_07530GO677_05820GO706_04005GO746_01000GO788_09450GO793_04165GO803_10640GO805_15060GO810_02175GO821_04115GO894_08850GO915_00045GO941_10765GO942_01035HMPREF2819_01000HMPREF3211_01552M1K003_0770NCTC10654_02399NCTC10988_02621NCTC5664_01687NCTC6133_03017NCTC7878_01034NCTC9944_02383RK64_11865SAMEA1029528_02031SAMEA1029547_01429SAMEA1029553_01099SAMEA1469856_00799SAMEA1469884_01233SAMEA1531680_01574SAMEA1531701_01515SAMEA1964876_00445SAMEA1965205_00265SAMEA1966505_00265SAMEA1969349_01213SAMEA1969845_00706SAMEA1971706_00627SAMEA1972827_01260SAMEA2076212_00380SAMEA2076218_01261SAMEA2076220_01004SAMEA2076226_01606SAMEA2076463_01018SAMEA2076464_01017SAMEA2076470_00632SAMEA2076472_00572SAMEA2076478_00685SAMEA2076480_00947SAMEA2076481_01600SAMEA2076743_01226SAMEA2076745_00714SAMEA2076746_01285SAMEA2076747_00960SAMEA2076749_00574SAMEA2076751_00063SAMEA2076752_01099SAMEA2076755_00573SAMEA2076756_00913SAMEA2076758_00724SAMEA2076759_00265SAMEA2076761_00265SAMEA2076762_00694SAMEA2076763_01342SAMEA2076764_00528SAMEA2076765_02002SAMEA2077023_00731SAMEA2077025_00265SAMEA2077027_00265SAMEA2077029_00044SAMEA2077031_00045SAMEA2077034_00265SAMEA2077035_01591SAMEA2077039_01088SAMEA2077040_01553SAMEA2077041_00527SAMEA2077044_00847SAMEA2077045_00265SAMEA2077046_00046SAMEA2077293_00062SAMEA2077294_01352SAMEA2077295_00063SAMEA2077297_01116SAMEA2077300_00265SAMEA2077301_00062SAMEA2077302_00063SAMEA2077303_00265SAMEA2077307_00265SAMEA2077832_00062SAMEA2078252_00264SAMEA2078256_00873SAMEA2078307_00265SAMEA2078308_01013SAMEA2078553_01500SAMEA2078558_01220SAMEA2078560_01662SAMEA2078569_00367SAMEA2078570_00062SAMEA2078572_00265SAMEA2078824_01017SAMEA2078837_00064SAMEA2079048_00264SAMEA2079051_00445SAMEA2079277_00780SAMEA2079291_00664SAMEA2079503_01084SAMEA2079507_00728SAMEA2079512_00995SAMEA2079517_00797SAMEA2079724_01590SAMEA2079727_01934SAMEA2079728_01690SAMEA2079732_01380SAMEA2079742_00599SAMEA2079946_01232SAMEA2079949_01542SAMEA2079951_01622SAMEA2079952_01673SAMEA2079957_01675SAMEA2079958_01379SAMEA2079960_00137SAMEA2079961_00796SAMEA2079968_01574SAMEA2080329_01790SAMEA2080330_00718SAMEA2080334_00558SAMEA2080433_01349SAMEA2080812_01365SAMEA2080898_00063SAMEA2080900_01206SAMEA2080904_00353SAMEA2080913_00063SAMEA2081043_00544SAMEA2081053_00264SAMEA2081054_01338SAMEA2081055_00265SAMEA2081060_00265SAMEA2081211_00487SAMEA2081213_00795SAMEA2081218_01785SAMEA2081341_01663SAMEA2081342_01335SAMEA2081349_01629SAMEA2081359_01669SAMEA2081362_00062SAMEA2081468_01452SAMEA2081474_01216SAMEA2081475_01026SAMEA2081476_01016SAMEA2081479_00814SAMEA2081480_00065SAMEA2081560_00445SAMEA2081561_00352SAMEA2081564_00045SAMEA2081567_00265SAMEA2081568_00063SAMEA2081569_01629SAMEA2081570_00047SAMEA2081571_00045SAMEA2081572_00445SAMEA2081573_01397SAMEA2081575_01304SAMEA2081577_01312SAMEA2081578_00995SAMEA2081579_00062SAMEA2081581_00444SAMEA2081582_00702SAMEA2081673_01778SAMEA2081674_01301SAMEA958766_01472SAMEA958770_01492SAMEA958772_01690SAMEA958778_01181SAMEA958779_00439SAMEA958785_01477SAMEA958793_01517SAMEA958798_00734SAMEA958804_01664SAMEA958810_01110SAMEA958836_01750SAMEA958838_00431SAMEA958845_01449SAMEA958846_01166SAMEA958848_00435SAMEA958855_00829SAMEA958858_01753SAMEA958870_00118SAMEA958898_00132SAMEA958906_00676SAMEA958924_01513SAMEA958925_01952SAMEA958951_01802SAMEA958953_01724SAMEA958961_01387SAMEA958979_01436SAMEA958987_00850SAMEA958995_01405SAST44_02488SAST45_02472

Find proteins for A0A077UGV8 (Staphylococcus schweitzeri)
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Entity ID: 1
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16S ribosomal RNAAa, Ba1539Staphylococcus aureus
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Entity ID: 23
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23S ribosomal RNAAA, BA2923Staphylococcus aureus
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(by identity cutoff)  |  Structure
Entity ID: 24
MoleculeChainsLengthOrganismImage
5S ribosomal RNAAB, BB115Staphylococcus aureus
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.76 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Swedish Research CouncilSwedenFFL15-0325
European Research CouncilIsrael322581

Revision History  (Full details and data files)

  • Version 1.0: 2018-03-21
    Type: Initial release
  • Version 1.1: 2018-05-30
    Changes: Data collection, Database references, Structure summary
  • Version 1.2: 2018-11-21
    Changes: Advisory, Data collection, Derived calculations