6K1B

Crystal structure of EXD2 exonuclease domain soaked in Mn and dGMP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.605 Å
  • R-Value Free: 0.275 
  • R-Value Work: 0.217 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of EXD2 exonuclease domain soaked in Mn and dGMP

Park, J.Lee, C.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Exonuclease 3'-5' domain-containing protein 2
A, B
220Homo sapiensMutation(s): 0 
Gene Names: EXD2 (C14orf114, EXDL2)
EC: 3.1.11.1
Find proteins for Q9NVH0 (Homo sapiens)
Go to Gene View: EXD2
Go to UniProtKB:  Q9NVH0
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MN
Query on MN

Download SDF File 
Download CCD File 
A, B
MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.605 Å
  • R-Value Free: 0.275 
  • R-Value Work: 0.217 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 46.339α = 90.00
b = 73.571β = 90.00
c = 131.951γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data reduction
PHENIXrefinement
PHENIXphasing
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2019-05-10 
  • Released Date: 2019-05-22 
  • Deposition Author(s): Park, J., Lee, C.

Revision History 

  • Version 1.0: 2019-05-22
    Type: Initial release