6LP3 | pdb_00006lp3

Structural basis and functional analysis epo1-bem3p complex for bud growth

• PDB DOI: https://doi.org/10.2210/pdb6LP3/pdb

• Classification: CELL ADHESION
• Organism(s): Saccharomyces cerevisiae S288C
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2020-01-08 Released: 2021-04-28 
• Deposition Author(s): Wang, J., Li, L., Ming, Z.H., Wu, L.J., Yan, L.M.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.55 Å
• R-Value Free: 
  0.398 (Depositor), 0.430 (DCC) 
• R-Value Work: 
  0.340 (Depositor), 0.360 (DCC) 
• R-Value Observed: 
  0.343 (Depositor) 

Literature

Structural basis and functional analysis epo1-bem3p complex for bud growth

Wang, J.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Hetero 6-mer - A4B2 Pseudo Symmetry: Cyclic - C2  (Explore in 3D)
Pseudo Stoichiometry: Hetero 6-mer - A2B2C2 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: immunoprecipitation

Macromolecule Content 

• Total Structure Weight: 112.3 kDa 
• Atom Count: 4,661 
• Modeled Residue Count: 566 
• Deposited Residue Count: 990 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein YMR124W	A, B, D, E	198	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: YMR124W, YM8564.06
UniProt
Find proteins for P39523 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P39523  Go to UniProtKB:  P39523

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
GTPase-activating protein BEM3	C, F	99	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: BEM3, YPL115C, LPH12C
UniProt
Find proteins for P32873 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P32873  Go to UniProtKB:  P32873

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.55 Å
• R-Value Free:  0.398 (Depositor), 0.430 (DCC) 
• R-Value Work:  0.340 (Depositor), 0.360 (DCC) 
• R-Value Observed: 0.343 (Depositor) 

Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 119.405	α = 90
b = 119.405	β = 90
c = 144.575	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data scaling
PDB_EXTRACT	data extraction
HKL-2000	data reduction
AutoSol	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2021-04-28 
Deposition Author(s): Wang, J., Li, L., Ming, Z.H., Wu, L.J., Yan, L.M.

Revision History  

• Version 1.0: 2021-04-28
  Type: Initial release
  
• Version 1.1: 2024-05-29
  Changes: Data collection, Database references