7JPJ

Crystal Structure of the essential dimeric LYSA from Phaeodactylum tricornutum


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.78 Å
  • R-Value Free: 0.241 
  • R-Value Work: 0.197 
  • R-Value Observed: 0.199 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

The Phaeodactylum tricornutum diaminopimelate decarboxylase was acquired via horizontal gene transfer from bacteria and displays substrate promiscuity

Bielinski, V.A.Brunson, J.K.Ghosh, A.Moosburner, M.A.Garza, E.A.Fussy, Z.Bai, J.McKinnie, S.M.K.Moore, B.S.Allen, A.E.Almo, S.C.Dupont, C.L.

(2020) Biorxiv 


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Diaminopimelate decarboxylaseA, B441Phaeodactylum tricornutum CCAP 1055/1Mutation(s): 0 
Gene Names: PHATRDRAFT_21592
UniProt
Find proteins for B7G3A2 (Phaeodactylum tricornutum (strain CCAP 1055/1))
Explore B7G3A2 
Go to UniProtKB:  B7G3A2
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.78 Å
  • R-Value Free: 0.241 
  • R-Value Work: 0.197 
  • R-Value Observed: 0.199 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 85.78α = 90
b = 86.324β = 90
c = 127.196γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2021-06-16
    Type: Initial release