7MX9

Crystal structure of the SARS-CoV-2 ORF8 accessory protein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.60 Å
  • R-Value Free: 0.297 
  • R-Value Work: 0.243 
  • R-Value Observed: 0.249 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

The unique ORF8 protein of SARS-CoV-2 binds to human dendritic cells and induces a cytokine storm

Hamdorf, M.Imhof, T.Theobald, S.J.Simonis, A.Di Cristanziano, V.Gieselmann, L.Dewald, F.Lehmann, C.Augustin, M.Klein, F.Alejandre Alcazar, M.A.Rongisch, R.Fabri, M.Cursiefen, C.Rybniker, J.Bailey-Elkin, B.A.Stetefeld, J.Koch, M.Bock, F.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
ORF8 proteinA113Severe acute respiratory syndrome coronavirus 2Mutation(s): 0 
Gene Names: 8
UniProt
Find proteins for P0DTC8 (Severe acute respiratory syndrome coronavirus 2)
Explore P0DTC8 
Go to UniProtKB:  P0DTC8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0DTC8
Protein Feature View
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.60 Å
  • R-Value Free: 0.297 
  • R-Value Work: 0.243 
  • R-Value Observed: 0.249 
  • Space Group: P 42 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 51.349α = 90
b = 51.349β = 90
c = 74.093γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XDSdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Natural Sciences and Engineering Research Council (NSERC, Canada)RGPIN-004954-2017
Canadian Institutes of Health Research (CIHR)201610PJT-152935

Revision History  (Full details and data files)

  • Version 1.0: 2023-01-25
    Type: Initial release