7PQM

Acinetobacter baumannii DNA gyrase B 23kDa ATPase subdomain complexed with EBL2888


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.224 
  • R-Value Work: 0.180 
  • R-Value Observed: 0.182 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.0 of the entry. See complete history


Literature

Acinetobacter baumannii DNA gyrase B 23kDa ATPase subdomain complexed with novobiocin

Cotman, A.E.Zega, A.Zidar, N.Ilas, J.Tomasic, T.Masic, L.P.Mundy, J.E.A.Stevenson, C.E.M.Burton, N.Lawson, D.M.Maxwell, A.Kikelj, D.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
DNA gyrase subunit BA, B206Acinetobacter baumannii 1419130Mutation(s): 0 
Gene Names: gyrBJ518_2757
EC: 5.6.2.2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
80S (Subject of Investigation/LOI)
Query on 80S

Download Ideal Coordinates CCD File 
C [auth A],
E [auth B]
2-[[3,4-bis(chloranyl)-5-methyl-1H-pyrrol-2-yl]carbonylamino]-4-[(1S)-1-phenylethoxy]-1,3-benzothiazole-6-carboxylic acid
C22 H17 Cl2 N3 O4 S
LXTDDWSYQKHDKA-NSHDSACASA-N
 Ligand Interaction
CA
Query on CA

Download Ideal Coordinates CCD File 
D [auth A]CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.224 
  • R-Value Work: 0.180 
  • R-Value Observed: 0.182 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 120.634α = 90
b = 48.293β = 123.85
c = 82.692γ = 90
Software Package:
Software NamePurpose
Aimlessdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
DIALSdata reduction
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Communitys Seventh Framework ProgrammeUnited Kingdom115583
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/P012523/1

Revision History  (Full details and data files)

  • Version 1.0: 2022-09-28
    Type: Initial release