7U5C

Cryo-EM structure of human CST bound to DNA polymerase alpha-primase in a recruitment state


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Cryo-EM structure of the human CST-Pol alpha /primase complex in a recruitment state.

Cai, S.W.Zinder, J.C.Svetlov, V.Bush, M.W.Nudler, E.Walz, T.de Lange, T.

(2022) Nat Struct Mol Biol 29: 813-819

  • DOI: https://doi.org/10.1038/s41594-022-00766-y
  • Primary Citation of Related Structures:  
    7U5C

  • PubMed Abstract: 

    The CST-Polα/primase complex is essential for telomere maintenance and functions to counteract resection at double-strand breaks. We report a 4.6-Å resolution cryo-EM structure of human CST-Polα/primase, captured prior to catalysis in a recruitment state stabilized by chemical cross-linking. Our structure reveals an evolutionarily conserved interaction between the C-terminal domain of the catalytic POLA1 subunit and an N-terminal expansion in metazoan CTC1. Cross-linking mass spectrometry and negative-stain EM analysis provide insight into CST binding by the flexible POLA1 N-terminus. Finally, Coats plus syndrome disease mutations previously characterized to disrupt formation of the CST-Polα/primase complex map to protein-protein interfaces observed in the recruitment state. Together, our results shed light on the architecture and stoichiometry of the metazoan fill-in machinery.


  • Organizational Affiliation

    Laboratory of Cell Biology and Genetics, The Rockefeller University, New York, NY, USA.


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
DNA primase small subunit420Homo sapiensMutation(s): 0 
Gene Names: PRIM1
EC: 2.7.7
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Find proteins for P49642 (Homo sapiens)
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PHAROS:  P49642
GTEx:  ENSG00000198056 
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UniProt GroupP49642
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
DNA primase large subunit512Homo sapiensMutation(s): 0 
Gene Names: PRIM2PRIM2A
EC: 2.7.7
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PHAROS:  P49643
GTEx:  ENSG00000146143 
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UniProt GroupP49643
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
DNA polymerase alpha catalytic subunit1,132Homo sapiensMutation(s): 0 
Gene Names: POLA1POLA
EC: 2.7.7.7
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PHAROS:  P09884
GTEx:  ENSG00000101868 
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UniProt GroupP09884
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
DNA polymerase alpha subunit B598Homo sapiensMutation(s): 0 
Gene Names: POLA2
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PHAROS:  Q14181
GTEx:  ENSG00000014138 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
CST complex subunit CTC11,221Homo sapiensMutation(s): 0 
Gene Names: CTC1C17orf68
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GTEx:  ENSG00000178971 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
CST complex subunit STN1368Homo sapiensMutation(s): 0 
Gene Names: STN1OBFC1
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PHAROS:  Q9H668
GTEx:  ENSG00000107960 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
CST complex subunit TEN1123Homo sapiensMutation(s): 0 
Gene Names: TEN1C17orf106
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Find proteins for Q86WV5 (Homo sapiens)
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GTEx:  ENSG00000257949 
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UniProt GroupQ86WV5
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Entity ID: 8
MoleculeChains LengthOrganismImage
canonical telomeric DNA sequence18Homo sapiens
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.0
MODEL REFINEMENTPHENIX1.17.1

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Cancer Institute (NIH/NCI)United States5 R35 CA210036
Breast Cancer Research FoundationUnited StatesBCRF-19-036

Revision History  (Full details and data files)

  • Version 1.0: 2022-05-18
    Type: Initial release
  • Version 1.1: 2022-06-01
    Changes: Database references
  • Version 1.2: 2022-08-24
    Changes: Database references
  • Version 1.3: 2024-02-14
    Changes: Data collection, Refinement description