8CXJ

The IgI3 domain of R28 protein from S. pyogenes bound to CEACAM1

PDB DOI: 10.2210/pdb8CXJ/pdb

Classification: CELL ADHESION
Organism(s): Homo sapiens, Streptococcus pyogenes
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2022-05-21 Released: 2023-03-15
Deposition Author(s): Bonsor, D.A., McCarthy, A.J.
Funding Organization(s): Biotechnology and Biological Sciences Research Council (BBSRC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.05 Å
R-Value Free: 0.238
R-Value Work: 0.207
R-Value Observed: 0.209

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

The IgI3 domain of R28 protein from S. pyogenes bound to CEACAM1

Bonsor, D.A., McCarthy, A.J.

To be published.

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Carcinoembryonic antigen-related cell adhesion molecule 1	A, B [auth C], C [auth E], D [auth G]	109	Homo sapiens	Mutation(s): 0 Gene Names: CEACAM1, BGP, BGP1
UniProt & NIH Common Fund Data Resources
Find proteins for P13688 (Homo sapiens) Explore P13688 Go to UniProtKB: P13688
PHAROS: P13688
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P13688
Protein Feature View Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Surface protein R28	F [auth B], E [auth D], G [auth F], H	125	Streptococcus pyogenes	Mutation(s): 0 Gene Names: spr28
UniProt
Find proteins for Q9XDB6 (Streptococcus pyogenes) Explore Q9XDB6 Go to UniProtKB: Q9XDB6
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9XDB6
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain AA [auth G] SDF format, chain J [auth A] SDF format, chain K [auth A] SDF format, chain L [auth A] SDF format, chain M [auth A] SDF format, chain Q [auth C] SDF format, chain R [auth C] SDF format, chain S [auth C] SDF format, chain T [auth C] SDF format, chain V [auth E] SDF format, chain W [auth E] SDF format, chain X [auth E] SDF format, chain Y [auth E] SDF format, chain Z [auth G] MOL2 format, chain AA [auth G] MOL2 format, chain J [auth A] MOL2 format, chain K [auth A] MOL2 format, chain L [auth A] MOL2 format, chain M [auth A] MOL2 format, chain Q [auth C] MOL2 format, chain R [auth C] MOL2 format, chain S [auth C] MOL2 format, chain T [auth C] MOL2 format, chain V [auth E] MOL2 format, chain W [auth E] MOL2 format, chain X [auth E] MOL2 format, chain Y [auth E] MOL2 format, chain Z [auth G]	AA [auth G], J [auth A], K [auth A], L [auth A], M [auth A], AA [auth G], J [auth A], K [auth A], L [auth A], M [auth A], Q [auth C], R [auth C], S [auth C], T [auth C], V [auth E], W [auth E], X [auth E], Y [auth E], Z [auth G]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Ligand Interaction
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain DA [auth B] SDF format, chain I [auth A] SDF format, chain O [auth C] SDF format, chain P [auth C] SDF format, chain U [auth E] MOL2 format, chain DA [auth B] MOL2 format, chain I [auth A] MOL2 format, chain O [auth C] MOL2 format, chain P [auth C] MOL2 format, chain U [auth E]	DA [auth B], I [auth A], O [auth C], P [auth C], U [auth E]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Ligand Interaction
CL Query on CL Download Ideal Coordinates CCD File SDF format, chain BA [auth G] SDF format, chain CA [auth D] SDF format, chain N [auth A] MOL2 format, chain BA [auth G] MOL2 format, chain CA [auth D] MOL2 format, chain N [auth A]	BA [auth G], CA [auth D], N [auth A]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Ligand Interaction