8P6B | pdb_00008p6b

Ruthenium complex bound to an antiparallel G-quadruplex

  • Classification: DNA
  • Organism(s): synthetic construct
  • Mutation(s): No 

  • Deposited: 2023-05-25 Released: 2024-06-12 
  • Deposition Author(s): McQuaid, K.T., Cardin, C.J.
  • Funding Organization(s): Biotechnology and Biological Sciences Research Council (BBSRC)

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 
    0.273 (Depositor), 0.290 (DCC) 
  • R-Value Work: 
    0.259 (Depositor), 0.270 (DCC) 
  • R-Value Observed: 
    0.260 (Depositor) 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.0 of the entry. See complete history


Literature

Ruthenium complex bound to an antiparallel G-quadruplex

McQuaid, K.T.Cardin, C.J.

To be published.

Macromolecules

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Entity ID: 1
MoleculeChains LengthOrganismImage
DNA (5'-D(*GP*GP*GP*TP*TP*TP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3')21synthetic construct
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free:  0.273 (Depositor), 0.290 (DCC) 
  • R-Value Work:  0.259 (Depositor), 0.270 (DCC) 
  • R-Value Observed: 0.260 (Depositor) 
Space Group: P 32 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 29.131α = 90
b = 29.131β = 90
c = 143.294γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
DIALSdata scaling
DIALSdata reduction
SHELXDphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/T008342/1

Revision History  (Full details and data files)

  • Version 1.0: 2024-06-12
    Type: Initial release