8PY2 | pdb_00008py2

Cryo-EM structure of the human BRISC dimer complex bound to compound JMS-175-2


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.32 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Molecular glues that inhibit deubiquitylase activity and inflammatory signaling.

Chandler, F.Reddy, P.A.N.Bhutda, S.Ross, R.L.Datta, A.Walden, M.Walker, K.Di Donato, S.Cassel, J.A.Prakesch, M.A.Aman, A.Datti, A.Campbell, L.J.Foglizzo, M.Bell, L.Stein, D.N.Ault, J.R.Al-Awar, R.S.Calabrese, A.N.Sicheri, F.Del Galdo, F.Salvino, J.M.Greenberg, R.A.Zeqiraj, E.

(2025) Nat Struct Mol Biol 

  • DOI: https://doi.org/10.1038/s41594-025-01517-5
  • Primary Citation of Related Structures:  
    8PVY, 8PY2

  • PubMed Abstract: 

    Deubiquitylases (DUBs) are crucial in cell signaling and are often regulated by interactions within protein complexes. The BRCC36 isopeptidase complex (BRISC) regulates inflammatory signaling by cleaving K63-linked polyubiquitin chains on type I interferon receptors (IFNAR1). As a Zn 2+ -dependent JAMM/MPN (JAB1, MOV34, MPR1, Pad1 N-terminal) DUB, BRCC36 is challenging to target with selective inhibitors. Here, we discover first-in-class inhibitors, termed BRISC molecular glues (BLUEs), which stabilize a 16-subunit human BRISC dimer in an autoinhibited conformation, blocking active sites and interactions with the targeting subunit, serine hydroxymethyltransferase 2. This unique mode of action results in selective inhibition of BRISC over related complexes with the same catalytic subunit, splice variants and other JAMM/MPN DUBs. BLUE treatment reduced interferon-stimulated gene expression in cells containing wild-type BRISC and this effect was abolished when using structure-guided, inhibitor-resistant BRISC mutants. Additionally, BLUEs increase IFNAR1 ubiquitylation and decrease IFNAR1 surface levels, offering a potential strategy to mitigate type I interferon-mediated diseases. Our approach also provides a template for designing selective inhibitors of large protein complexes by promoting rather than blocking protein-protein interactions.


  • Organizational Affiliation
    • Astbury Centre for Structural Molecular Biology, School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds, UK.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Lys-63-specific deubiquitinase BRCC36
A, C, G, I
316Homo sapiensMutation(s): 0 
Gene Names: BRCC3BRCC36C6.1ACXorf53
EC: 3.4.19
UniProt & NIH Common Fund Data Resources
Find proteins for P46736 (Homo sapiens)
Explore P46736 
Go to UniProtKB:  P46736
PHAROS:  P46736
GTEx:  ENSG00000185515 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP46736
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
BRISC complex subunit Abraxas 2
B, D, H, J
267Homo sapiensMutation(s): 0 
Gene Names: ABRAXAS2ABRO1FAM175BKIAA0157
UniProt & NIH Common Fund Data Resources
Find proteins for Q15018 (Homo sapiens)
Explore Q15018 
Go to UniProtKB:  Q15018
PHAROS:  Q15018
GTEx:  ENSG00000165660 
Entity Groups  
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UniProt GroupQ15018
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
BRISC and BRCA1-A complex member 2
E, F, K, L
385Homo sapiensMutation(s): 0 
Gene Names: BABAM2BRCC45BRE
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NXR7 (Homo sapiens)
Explore Q9NXR7 
Go to UniProtKB:  Q9NXR7
PHAROS:  Q9NXR7
GTEx:  ENSG00000158019 
Entity Groups  
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UniProt GroupQ9NXR7
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
BRISC and BRCA1-A complex member 1
M, N, O, P
259Homo sapiensMutation(s): 0 
Gene Names: BABAM1C19orf62MERIT40NBA1HSPC142
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NWV8 (Homo sapiens)
Explore Q9NWV8 
Go to UniProtKB:  Q9NWV8
PHAROS:  Q9NWV8
GTEx:  ENSG00000105393 
Entity Groups  
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UniProt GroupQ9NWV8
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.32 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.1.1

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom219997/Z/19/Z
Wellcome TrustUnited Kingdom--

Revision History  (Full details and data files)

  • Version 1.0: 2025-02-05
    Type: Initial release
  • Version 1.1: 2025-08-20
    Changes: Data collection, Database references