8RS4 | pdb_00008rs4

Flavin-dependent tryptophan 6-halogenase Thal in complex with tryptoline


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 
    0.204 (Depositor), 0.203 (DCC) 
  • R-Value Work: 
    0.169 (Depositor), 0.169 (DCC) 
  • R-Value Observed: 
    0.171 (Depositor) 

Starting Model: experimental
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Literature

Structural Basis of Regioselective Bromination of Tricyclic Tryptoline by the Tryptophan Halogenase Thal.

Bork, S.Besse, C.Sewald, N.Niemann, H.H.

(2025) Chembiochem : e202500246-e202500246

  • DOI: https://doi.org/10.1002/cbic.202500246
  • Primary Citation of Related Structures:  
    8RS4

  • PubMed Abstract: 

    Flavin-dependent halogenases (FDHs) carry out substrate-specific and regioselective halogenation reactions in the biosynthesis of various halogenated natural compounds. Several FDHs convert non-native substrates in vitro. However, obtaining experimental structures of FDHs with non-native substrates remains challenging and docking often produces ambiguous results. Hence, there is a lack of data on how non-native substrates bind to FDHs. Here, we show that the tryptophan 6-halogenase Thal efficiently brominates the tricyclic indole derivative tryptoline (1,2,3,4-tetrahydro-β-carboline) with high regioselectivity. The two point mutations G113S and G469S improve regioselectivity even further. A crystal structure reveals how tryptoline binds to the active site of Thal. The halogenated carbons are located close to the catalytic lysine and the NH of tryptoline's tetrahydropyridine is positioned like the amino group of the native substrate tryptophan. The substrate binding loop of Thal is closed, again resembling the binding of tryptophan. Our work extends the range of non-native substrates accepted by Thal, confirming the versatility of this FDH. Moreover, it is a rare example of an FDH structure in complex with a non-native substrate.


  • Organizational Affiliation

    Bielefeld University: Universitat Bielefeld, Department of Chemistry, Universitätsstraße 25, 33615, Bielefeld, GERMANY.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Tryptophan 6-halogenase ThaL
A, B
533Streptomyces albogriseolusMutation(s): 0 
Gene Names: thaLthdH
EC: 1.14.19.59
UniProt
Find proteins for A1E280 (Streptomyces albogriseolus)
Explore A1E280 
Go to UniProtKB:  A1E280
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA1E280
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
WYH (Subject of Investigation/LOI)
Query on WYH

Download Ideal Coordinates CCD File 
C [auth A],
D [auth A],
F [auth A],
P [auth B]
2,3,4,9-tetrahydro-1~{H}-pyrido[3,4-b]indole
C11 H12 N2
CFTOTSJVQRFXOF-UHFFFAOYSA-N
PO4
Query on PO4

Download Ideal Coordinates CCD File 
L [auth A],
M [auth A],
N [auth A],
R [auth B],
S [auth B]
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
GOL
Query on GOL

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E [auth A]
G [auth A]
H [auth A]
I [auth A]
J [auth A]
E [auth A],
G [auth A],
H [auth A],
I [auth A],
J [auth A],
K [auth A],
Q [auth B]
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
NA
Query on NA

Download Ideal Coordinates CCD File 
O [auth A],
T [auth B]
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free:  0.204 (Depositor), 0.203 (DCC) 
  • R-Value Work:  0.169 (Depositor), 0.169 (DCC) 
  • R-Value Observed: 0.171 (Depositor) 
Space Group: P 64
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 137.59α = 90
b = 137.59β = 90
c = 144.05γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling
Cootmodel building
PHENIXphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research Foundation (DFG)GermanyNI 694/10-1

Revision History  (Full details and data files)

  • Version 1.0: 2025-06-04
    Type: Initial release