8S7G | pdb_00008s7g

Cryo-EM structure of Pseudomonas aeruginosa Recombinase A (RecA) in complex with LexAS125A mutant


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.43 Å
  • Aggregation State: HELICAL ARRAY 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Snapshots of Pseudomonas aeruginosa SOS response reveal structural requisites for LexA autoproteolysis.

Vascon, F.De Felice, S.Gasparotto, M.Huber, S.T.Catalano, C.Chinellato, M.Mezzetti, R.Grinzato, A.Filippini, F.Maso, L.Jakobi, A.J.Cendron, L.

(2025) iScience 28: 111726-111726

  • DOI: https://doi.org/10.1016/j.isci.2024.111726
  • Primary Citation of Related Structures:  
    8B0V, 8S70, 8S7G

  • PubMed Abstract: 

    Antimicrobial resistance poses a severe threat to human health and Pseudomonas aeruginosa stands out among the pathogens responsible for this emergency. The SOS response to DNA damage is crucial in bacterial evolution, influencing resistance development and adaptability in challenging environments, especially under antibiotic exposure. Recombinase A (RecA) and the transcriptional repressor LexA are the key players that orchestrate this process, determining either the silencing or the active transcription of the genes under their control. By integrating state-of-the-art structural approaches with in vitro binding and functional assays, we elucidated the molecular events activating the SOS response in P. aeruginosa , focusing on the RecA-LexA interaction. Our findings identify the conserved determinants and strength of the interactions that allow RecA to trigger LexA autocleavage and inactivation. These results provide the groundwork for designing novel antimicrobial strategies and exploring the potential translation of Escherichia coli -derived approaches, to address the implications of P. aeruginosa infections.


  • Organizational Affiliation
    • Department of Biology, University of Padua, Via Ugo Bassi 58/b, 35131 Padova, Italy.

Macromolecules

Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
LexA repressor
A, B
211Pseudomonas aeruginosaMutation(s): 1 
Gene Names: lexAPA3007
EC: 3.4.21.88
UniProt
Find proteins for P37452 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1))
Explore P37452 
Go to UniProtKB:  P37452
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP37452
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Protein RecA361Pseudomonas aeruginosaMutation(s): 0 
Gene Names: recAPA3617
UniProt
Find proteins for P08280 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1))
Explore P08280 
Go to UniProtKB:  P08280
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP08280
Sequence Annotations
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  • Reference Sequence
Find similar nucleic acids by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains LengthOrganismImage
DNA (36-MER)L [auth T]36synthetic construct
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
AGS (Subject of Investigation/LOI)
Query on AGS

Download Ideal Coordinates CCD File 
BA [auth J]
DA [auth K]
FA [auth L]
HA [auth C]
JA [auth M]
BA [auth J],
DA [auth K],
FA [auth L],
HA [auth C],
JA [auth M],
P [auth D],
R [auth E],
T [auth F],
V [auth G],
X [auth H],
Z [auth I]
PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
C10 H16 N5 O12 P3 S
NLTUCYMLOPLUHL-KQYNXXCUSA-N
MG (Subject of Investigation/LOI)
Query on MG

Download Ideal Coordinates CCD File 
AA [auth J]
CA [auth K]
EA [auth L]
GA [auth C]
IA [auth M]
AA [auth J],
CA [auth K],
EA [auth L],
GA [auth C],
IA [auth M],
O [auth D],
Q [auth E],
S [auth F],
U [auth G],
W [auth H],
Y [auth I]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.43 Å
  • Aggregation State: HELICAL ARRAY 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC4.2.1
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Italian Ministry of EducationItaly--

Revision History  (Full details and data files)

  • Version 1.0: 2025-01-15
    Type: Initial release
  • Version 1.1: 2025-02-12
    Changes: Data collection, Database references
  • Version 1.2: 2025-03-12
    Changes: Data collection
  • Version 1.3: 2025-07-02
    Changes: Data collection