8UIY | pdb_00008uiy

In situ human P-Z state 80S ribosome

• PDB DOI: https://doi.org/10.2210/pdb8UIY/pdb
• EM Map EMD-42305: EMDB EMDataResource
• NAKB: 8UIY

• Classification: RIBOSOME
• Organism(s): Homo sapiens
• Mutation(s): No 


• Deposited: 2023-10-10 Released: 2025-04-09 
• Deposition Author(s): Wei, Z., Yong, X.
• Funding Organization(s): Not funded

---

Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.44 Å
• Aggregation State: CELL 
• Reconstruction Method: SINGLE PARTICLE 

Literature

In situ human P-Z state 80S ribosome

Wei, Z., Yong, X.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 78-mer - AA1AB1AC1AD1AE1AF1AG1AH1AI1AJ1AK1AL1AM1AN1AO1AP1AQ1AR1AS1AT1AU1AV1AW1AX1AY1AZ1Aa1Ab1Ac1Ad1Ae1Af1Ag1Ah1Ai1Aj1Ak1Al1Am1An1Ao1Ap1Aq1Ar1As1At1Au1Av1Aw1Ax1Ay1Az1BA1BB1BC1BD1BE1BF1BG1BH1BI1BJ1BK1BL1BM1BN1BO1BP1BQ1BR1BS1BT1BU1BV1BW1BX1BY1BZ1 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 78-mer - AA2AB1AC1AD1AE1AF1AG1AH1AI1AJ1AK1AL1AM1AN1AO1AP1AQ1AR1AS1AT1AU1AV1AW1AX1AY1AZ1Aa1Ab1Ac1Ad1Ae1Af1Ag1Ah1Ai1Aj1Ak1Al1Am1An1Ao1Ap1Aq1Ar1As1At1Au1Av1Aw1Ax1Ay1Az1BA1BB1BC1BD1BE1BF1BG1BH1BI1BJ1BK1BL1BM1BN1BO1BP1BQ1BR1BS1BT1BU1BV1BW1BX1BY1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: electron microscopy

Macromolecule Content

• Total Structure Weight: 3,730.79 kDa 
• Atom Count: 222,758 
• Modelled Residue Count: 17,938 
• Deposited Residue Count: 19,327 
• Unique protein chains: 78
• Unique nucleic acid chains: 6

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein L24	A [auth LW]	124	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for A0A994J4A5 (Homo sapiens) Explore A0A994J4A5  Go to UniProtKB:  A0A994J4A5
GTEx:  ENSG00000114391

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L19	B [auth LR]	187	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P84098 (Homo sapiens) Explore P84098  Go to UniProtKB:  P84098
PHAROS:  P84098 GTEx:  ENSG00000108298

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein eS4, X isoform	C [auth SE]	262	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62701 (Homo sapiens) Explore P62701  Go to UniProtKB:  P62701
PHAROS:  P62701 GTEx:  ENSG00000198034

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S8	D [auth SI]	206	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62241 (Homo sapiens) Explore P62241  Go to UniProtKB:  P62241
PHAROS:  P62241 GTEx:  ENSG00000142937

Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S11	E [auth SL]	153	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62280 (Homo sapiens) Explore P62280  Go to UniProtKB:  P62280
PHAROS:  P62280 GTEx:  ENSG00000142534

Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S23	F [auth SX]	141	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62266 (Homo sapiens) Explore P62266  Go to UniProtKB:  P62266
PHAROS:  P62266 GTEx:  ENSG00000186468

Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S6	G [auth SG]	237	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62753 (Homo sapiens) Explore P62753  Go to UniProtKB:  P62753
PHAROS:  P62753 GTEx:  ENSG00000137154

Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S9	H [auth SJ]	185	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P46781 (Homo sapiens) Explore P46781  Go to UniProtKB:  P46781
PHAROS:  P46781 GTEx:  ENSG00000170889

Entity ID: 9
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S24	I [auth SY]	131	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62847 (Homo sapiens) Explore P62847  Go to UniProtKB:  P62847
PHAROS:  P62847 GTEx:  ENSG00000138326

Entity ID: 10
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein eS30	J [auth Se]	58	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62861 (Homo sapiens) Explore P62861  Go to UniProtKB:  P62861
PHAROS:  P62861 GTEx:  ENSG00000149806

Entity ID: 11
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein SA	K [auth SA]	221	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P08865 (Homo sapiens) Explore P08865  Go to UniProtKB:  P08865
PHAROS:  P08865 GTEx:  ENSG00000168028

Entity ID: 12
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S3a	L [auth SB]	214	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P61247 (Homo sapiens) Explore P61247  Go to UniProtKB:  P61247
GTEx:  ENSG00000145425

Entity ID: 13
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein eS7	M [auth SH]	189	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62081 (Homo sapiens) Explore P62081  Go to UniProtKB:  P62081
PHAROS:  P62081 GTEx:  ENSG00000171863

Entity ID: 14
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S21	N [auth SV]	83	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P63220 (Homo sapiens) Explore P63220  Go to UniProtKB:  P63220
PHAROS:  P63220 GTEx:  ENSG00000171858

Entity ID: 15
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S26	O [auth Sa]	102	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62854 (Homo sapiens) Explore P62854  Go to UniProtKB:  P62854
PHAROS:  P62854 GTEx:  ENSG00000197728

Entity ID: 16
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S2	P [auth SC]	222	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P15880 (Homo sapiens) Explore P15880  Go to UniProtKB:  P15880
PHAROS:  P15880 GTEx:  ENSG00000140988

Entity ID: 17
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S13	Q [auth SN]	150	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62277 (Homo sapiens) Explore P62277  Go to UniProtKB:  P62277
PHAROS:  P62277 GTEx:  ENSG00000110700

Entity ID: 18
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein uS11	R [auth SO]	140	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62263 (Homo sapiens) Explore P62263  Go to UniProtKB:  P62263
PHAROS:  P62263 GTEx:  ENSG00000164587

Entity ID: 19
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S15a	S [auth SW]	129	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62244 (Homo sapiens) Explore P62244  Go to UniProtKB:  P62244
PHAROS:  P62244 GTEx:  ENSG00000134419

Entity ID: 20
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein eS27	T [auth Sb]	83	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P42677 (Homo sapiens) Explore P42677  Go to UniProtKB:  P42677
PHAROS:  P42677 GTEx:  ENSG00000177954

Entity ID: 24
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L8	X [auth LA]	248	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62917 (Homo sapiens) Explore P62917  Go to UniProtKB:  P62917
GTEx:  ENSG00000161016

Entity ID: 25
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein uL3	Y [auth LB]	402	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P39023 (Homo sapiens) Explore P39023  Go to UniProtKB:  P39023
PHAROS:  P39023 GTEx:  ENSG00000100316

Entity ID: 26
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L4	Z [auth LC]	368	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P36578 (Homo sapiens) Explore P36578  Go to UniProtKB:  P36578
PHAROS:  P36578 GTEx:  ENSG00000174444

Entity ID: 27
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein uL18	AA [auth LD]	293	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P46777 (Homo sapiens) Explore P46777  Go to UniProtKB:  P46777
PHAROS:  P46777 GTEx:  ENSG00000122406

Entity ID: 28
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein eL6	BA [auth LE]	247	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q02878 (Homo sapiens) Explore Q02878  Go to UniProtKB:  Q02878
PHAROS:  Q02878 GTEx:  ENSG00000089009

Entity ID: 29
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L7	CA [auth LF]	225	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P18124 (Homo sapiens) Explore P18124  Go to UniProtKB:  P18124
PHAROS:  P18124 GTEx:  ENSG00000147604

Entity ID: 30
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L7a	DA [auth LG]	241	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62424 (Homo sapiens) Explore P62424  Go to UniProtKB:  P62424
PHAROS:  P62424 GTEx:  ENSG00000148303

Entity ID: 31
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L9	EA [auth LH]	190	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P32969 (Homo sapiens) Explore P32969  Go to UniProtKB:  P32969
PHAROS:  P32969 GTEx:  ENSG00000163682

Entity ID: 32
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein uL16-like	FA [auth LI]	213	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q96L21 (Homo sapiens) Explore Q96L21  Go to UniProtKB:  Q96L21
PHAROS:  Q96L21 GTEx:  ENSG00000165496

Entity ID: 33
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L11	GA [auth LJ]	176	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62913 (Homo sapiens) Explore P62913  Go to UniProtKB:  P62913
PHAROS:  P62913 GTEx:  ENSG00000142676

Entity ID: 34
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein eL13	HA [auth LL]	210	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P26373 (Homo sapiens) Explore P26373  Go to UniProtKB:  P26373
PHAROS:  P26373 GTEx:  ENSG00000167526

Entity ID: 35
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L14	IA [auth LM]	139	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P50914 (Homo sapiens) Explore P50914  Go to UniProtKB:  P50914
PHAROS:  P50914 GTEx:  ENSG00000188846

Entity ID: 36
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L15	JA [auth LN]	203	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P61313 (Homo sapiens) Explore P61313  Go to UniProtKB:  P61313
PHAROS:  P61313 GTEx:  ENSG00000174748

Entity ID: 37
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L13a	KA [auth LO]	201	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P40429 (Homo sapiens) Explore P40429  Go to UniProtKB:  P40429
PHAROS:  P40429 GTEx:  ENSG00000142541

Entity ID: 38
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L17	LA [auth LP]	153	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P18621 (Homo sapiens) Explore P18621  Go to UniProtKB:  P18621
PHAROS:  P18621 GTEx:  ENSG00000265681

Entity ID: 39
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L18	MA [auth LQ]	187	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q07020 (Homo sapiens) Explore Q07020  Go to UniProtKB:  Q07020
PHAROS:  Q07020 GTEx:  ENSG00000063177

Entity ID: 40
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L18a	NA [auth LS]	175	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q02543 (Homo sapiens) Explore Q02543  Go to UniProtKB:  Q02543
GTEx:  ENSG00000105640

Entity ID: 41
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L21	OA [auth LT]	159	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P46778 (Homo sapiens) Explore P46778  Go to UniProtKB:  P46778
PHAROS:  P46778 GTEx:  ENSG00000122026

Entity ID: 42
Molecule	Chains	Sequence Length	Organism	Details	Image
Heparin-binding protein HBp15	PA [auth LU]	101	Homo sapiens	Mutation(s): 0
UniProt
Find proteins for Q7Z4W8 (Homo sapiens) Explore Q7Z4W8  Go to UniProtKB:  Q7Z4W8

Entity ID: 43
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L23	QA [auth LV]	131	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62829 (Homo sapiens) Explore P62829  Go to UniProtKB:  P62829
PHAROS:  P62829 GTEx:  ENSG00000125691

Entity ID: 44
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L23a	RA [auth LX]	120	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62750 (Homo sapiens) Explore P62750  Go to UniProtKB:  P62750
PHAROS:  P62750 GTEx:  ENSG00000198242

Entity ID: 45
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L26	SA [auth LY]	134	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P61254 (Homo sapiens) Explore P61254  Go to UniProtKB:  P61254
PHAROS:  P61254 GTEx:  ENSG00000161970

Entity ID: 46
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L27	TA [auth LZ]	135	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P61353 (Homo sapiens) Explore P61353  Go to UniProtKB:  P61353
PHAROS:  P61353 GTEx:  ENSG00000131469

Entity ID: 47
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L27a	UA [auth La]	147	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P46776 (Homo sapiens) Explore P46776  Go to UniProtKB:  P46776
PHAROS:  P46776 GTEx:  ENSG00000166441

Entity ID: 48
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein eL29	VA [auth Lb]	121	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P47914 (Homo sapiens) Explore P47914  Go to UniProtKB:  P47914
GTEx:  ENSG00000162244

Entity ID: 49
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L30	WA [auth Lc]	98	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62888 (Homo sapiens) Explore P62888  Go to UniProtKB:  P62888
PHAROS:  P62888 GTEx:  ENSG00000156482

Entity ID: 50
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L31	XA [auth Ld]	107	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62899 (Homo sapiens) Explore P62899  Go to UniProtKB:  P62899
PHAROS:  P62899 GTEx:  ENSG00000071082

Entity ID: 51
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L32	YA [auth Le]	128	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62910 (Homo sapiens) Explore P62910  Go to UniProtKB:  P62910
PHAROS:  P62910 GTEx:  ENSG00000144713

Entity ID: 52
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L35a	ZA [auth Lf]	109	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P18077 (Homo sapiens) Explore P18077  Go to UniProtKB:  P18077
PHAROS:  P18077 GTEx:  ENSG00000182899

Entity ID: 53
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L34	AB [auth Lg]	114	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P49207 (Homo sapiens) Explore P49207  Go to UniProtKB:  P49207
PHAROS:  P49207 GTEx:  ENSG00000109475

Entity ID: 54
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L35	BB [auth Lh]	122	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P42766 (Homo sapiens) Explore P42766  Go to UniProtKB:  P42766
PHAROS:  P42766 GTEx:  ENSG00000136942

Entity ID: 55
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L36	CB [auth Li]	102	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y3U8 (Homo sapiens) Explore Q9Y3U8  Go to UniProtKB:  Q9Y3U8
PHAROS:  Q9Y3U8 GTEx:  ENSG00000130255

Entity ID: 56
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L37	DB [auth Lj]	86	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P61927 (Homo sapiens) Explore P61927  Go to UniProtKB:  P61927
PHAROS:  P61927 GTEx:  ENSG00000145592

Entity ID: 57
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L38	EB [auth Lk]	69	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P63173 (Homo sapiens) Explore P63173  Go to UniProtKB:  P63173
PHAROS:  P63173 GTEx:  ENSG00000172809

Entity ID: 58
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L39	FB [auth Ll]	50	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62891 (Homo sapiens) Explore P62891  Go to UniProtKB:  P62891
GTEx:  ENSG00000198918

Entity ID: 59
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein eL40	GB [auth Lm]	52	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62987 (Homo sapiens) Explore P62987  Go to UniProtKB:  P62987
PHAROS:  P62987 GTEx:  ENSG00000221983

Entity ID: 60
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L41	HB [auth Ln]	24	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62945 (Homo sapiens) Explore P62945  Go to UniProtKB:  P62945
PHAROS:  P62945 GTEx:  ENSG00000229117

Entity ID: 61
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L36a	IB [auth Lo]	105	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P83881 (Homo sapiens) Explore P83881  Go to UniProtKB:  P83881
PHAROS:  P83881 GTEx:  ENSG00000241343

Entity ID: 62
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L37a	JB [auth Lp]	91	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P61513 (Homo sapiens) Explore P61513  Go to UniProtKB:  P61513
PHAROS:  P61513 GTEx:  ENSG00000197756

Entity ID: 63
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L28	KB [auth Lr]	125	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P46779 (Homo sapiens) Explore P46779  Go to UniProtKB:  P46779
PHAROS:  P46779 GTEx:  ENSG00000108107

Entity ID: 64
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S17	LB [auth SR]	135	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P08708 (Homo sapiens) Explore P08708  Go to UniProtKB:  P08708
PHAROS:  P08708 GTEx:  ENSG00000182774

Entity ID: 65
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein uS3	MB [auth SD]	227	Homo sapiens	Mutation(s): 0  EC: 4.2.99.18
UniProt & NIH Common Fund Data Resources
Find proteins for P23396 (Homo sapiens) Explore P23396  Go to UniProtKB:  P23396
PHAROS:  P23396 GTEx:  ENSG00000149273

Entity ID: 66
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S5	NB [auth SF]	189	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P46782 (Homo sapiens) Explore P46782  Go to UniProtKB:  P46782
PHAROS:  P46782 GTEx:  ENSG00000083845

Entity ID: 67
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S10	OB [auth SK]	98	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P46783 (Homo sapiens) Explore P46783  Go to UniProtKB:  P46783
PHAROS:  P46783 GTEx:  ENSG00000124614

Entity ID: 68
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein uS19	PB [auth SP]	121	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62841 (Homo sapiens) Explore P62841  Go to UniProtKB:  P62841
PHAROS:  P62841 GTEx:  ENSG00000115268

Entity ID: 69
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein uS9	QB [auth SQ]	144	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62249 (Homo sapiens) Explore P62249  Go to UniProtKB:  P62249
PHAROS:  P62249 GTEx:  ENSG00000105193

Entity ID: 70
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S18	RB [auth SS]	145	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62269 (Homo sapiens) Explore P62269  Go to UniProtKB:  P62269
PHAROS:  P62269 GTEx:  ENSG00000231500

Entity ID: 71
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S19	SB [auth ST]	143	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P39019 (Homo sapiens) Explore P39019  Go to UniProtKB:  P39019
PHAROS:  P39019 GTEx:  ENSG00000105372

Entity ID: 72
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S20	TB [auth SU]	104	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P60866 (Homo sapiens) Explore P60866  Go to UniProtKB:  P60866
PHAROS:  P60866 GTEx:  ENSG00000008988

Entity ID: 73
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S28	UB [auth Sc]	64	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62857 (Homo sapiens) Explore P62857  Go to UniProtKB:  P62857
PHAROS:  P62857 GTEx:  ENSG00000233927

Entity ID: 74
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S29	VB [auth Sd]	55	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62273 (Homo sapiens) Explore P62273  Go to UniProtKB:  P62273
PHAROS:  P62273 GTEx:  ENSG00000213741

Entity ID: 75
Molecule	Chains	Sequence Length	Organism	Details	Image
Receptor of activated protein C kinase 1	WB [auth Sg]	313	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P63244 (Homo sapiens) Explore P63244  Go to UniProtKB:  P63244
PHAROS:  P63244 GTEx:  ENSG00000204628

Entity ID: 76
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein eS12	XB [auth SM]	122	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P25398 (Homo sapiens) Explore P25398  Go to UniProtKB:  P25398
PHAROS:  P25398 GTEx:  ENSG00000112306

Entity ID: 77
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein eS25	YB [auth SZ]	75	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62851 (Homo sapiens) Explore P62851  Go to UniProtKB:  P62851
PHAROS:  P62851 GTEx:  ENSG00000118181

Entity ID: 78
Molecule	Chains	Sequence Length	Organism	Details	Image
Ubiquitin-40S ribosomal protein S27a	ZB [auth Sf]	67	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62979 (Homo sapiens) Explore P62979  Go to UniProtKB:  P62979
PHAROS:  P62979 GTEx:  ENSG00000143947

Entity ID: 82
Molecule	Chains	Sequence Length	Organism	Details	Image
60S acidic ribosomal protein P0	DC [auth Ls]	196	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P05388 (Homo sapiens) Explore P05388  Go to UniProtKB:  P05388
PHAROS:  P05388 GTEx:  ENSG00000089157

Entity ID: 83
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein uL11	EC [auth Lt]	157	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P30050 (Homo sapiens) Explore P30050  Go to UniProtKB:  P30050
PHAROS:  P30050 GTEx:  ENSG00000197958

Entity ID: 84
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L10a	FC [auth Lz]	217	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62906 (Homo sapiens) Explore P62906  Go to UniProtKB:  P62906
PHAROS:  P62906 GTEx:  ENSG00000198755

Entity ID: 21
Molecule	Chains	Length	Organism	Image
28S rRNA	U [auth L5]	5,070	Homo sapiens

Entity ID: 22
Molecule	Chains	Length	Organism	Image
5S rRNA [Homo sapiens]	V [auth L7]	120	Homo sapiens

Entity ID: 23
Molecule	Chains	Length	Organism	Image
5.8S rRNA [Homo sapiens]	W [auth L8]	156	Homo sapiens

Entity ID: 79
Molecule	Chains	Length	Organism	Image
18S rRNA	AC [auth S2]	1,740	Homo sapiens

Entity ID: 80
Molecule	Chains	Length	Organism	Image
P site tRNA	BC [auth Pt]	76	Homo sapiens

Entity ID: 81
Molecule	Chains	Length	Organism	Image
Z site tRNA	CC [auth Zt]	75	Homo sapiens

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ZN (Subject of Investigation/LOI)	AL [auth Lj], BL [auth Lm], CL [auth Lo], DL [auth Lp], GC [auth Sa], YK [auth Lg]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N
MG (Subject of Investigation/LOI)	AD [auth L5], AE [auth L5], AF [auth L5], AG [auth L5], AH [auth L5], AI [auth L5], AJ [auth L5], AK [auth L5], AM [auth S2], BD [auth L5], BE [auth L5], BF [auth L5], BG [auth L5], BH [auth L5], BI [auth L5], BJ [auth L5], BK [auth L5], BM [auth S2], CD [auth L5], CE [auth L5], CF [auth L5], CG [auth L5], CH [auth L5], CI [auth L5], CJ [auth L5], CK [auth L5], CM [auth S2], DD [auth L5], DE [auth L5], DF [auth L5], DG [auth L5], DH [auth L5], DI [auth L5], DJ [auth L5], DK [auth L5], DM [auth S2], ED [auth L5], EE [auth L5], EF [auth L5], EG [auth L5], EH [auth L5], EI [auth L5], EJ [auth L5], EK [auth L5], EL [auth S2], EM [auth S2], FD [auth L5], FE [auth L5], FF [auth L5], FG [auth L5], FH [auth L5], FI [auth L5], FJ [auth L5], FK [auth L5], FL [auth S2], FM [auth S2], GD [auth L5], GE [auth L5], GF [auth L5], GG [auth L5], GH [auth L5], GI [auth L5], GJ [auth L5], GK [auth L5], GL [auth S2], GM [auth S2], HC [auth L5], HD [auth L5], HE [auth L5], HF [auth L5], HG [auth L5], HH [auth L5], HI [auth L5], HJ [auth L5], HK [auth L5], HL [auth S2], IC [auth L5], ID [auth L5], IE [auth L5], IF [auth L5], IG [auth L5], IH [auth L5], II [auth L5], IJ [auth L5], IK [auth L5], IL [auth S2], JC [auth L5], JD [auth L5], JE [auth L5], JF [auth L5], JG [auth L5], JH [auth L5], JI [auth L5], JJ [auth L5], JK [auth L5], JL [auth S2], KC [auth L5], KD [auth L5], KE [auth L5], KF [auth L5], KG [auth L5], KH [auth L5], KI [auth L5], KJ [auth L5], KK [auth L5], KL [auth S2], LC [auth L5], LD [auth L5], LE [auth L5], LF [auth L5], LG [auth L5], LH [auth L5], LI [auth L5], LJ [auth L5], LK [auth L7], LL [auth S2], MC [auth L5], MD [auth L5], ME [auth L5], MF [auth L5], MG [auth L5], MH [auth L5], MI [auth L5], MJ [auth L5], MK [auth L7], ML [auth S2], NC [auth L5], ND [auth L5], NE [auth L5], NF [auth L5], NG [auth L5], NH [auth L5], NI [auth L5], NJ [auth L5], NK [auth L7], NL [auth S2], OC [auth L5], OD [auth L5], OE [auth L5], OF [auth L5], OG [auth L5], OH [auth L5], OI [auth L5], OJ [auth L5], OK [auth L8], OL [auth S2], PC [auth L5], PD [auth L5], PE [auth L5], PF [auth L5], PG [auth L5], PH [auth L5], PI [auth L5], PJ [auth L5], PK [auth L8], PL [auth S2], QC [auth L5], QD [auth L5], QE [auth L5], QF [auth L5], QG [auth L5], QH [auth L5], QI [auth L5], QJ [auth L5], QK [auth L8], QL [auth S2], RC [auth L5], RD [auth L5], RE [auth L5], RF [auth L5], RG [auth L5], RH [auth L5], RI [auth L5], RJ [auth L5], RK [auth L8], RL [auth S2], SC [auth L5], SD [auth L5], SE [auth L5], SF [auth L5], SG [auth L5], SH [auth L5], SI [auth L5], SJ [auth L5], SK [auth LA], SL [auth S2], TC [auth L5], TD [auth L5], TE [auth L5], TF [auth L5], TG [auth L5], TH [auth L5], TI [auth L5], TJ [auth L5], TK [auth LP], TL [auth S2], UC [auth L5], UD [auth L5], UE [auth L5], UF [auth L5], UG [auth L5], UH [auth L5], UI [auth L5], UJ [auth L5], UK [auth LV], UL [auth S2], VC [auth L5], VD [auth L5], VE [auth L5], VF [auth L5], VG [auth L5], VH [auth L5], VI [auth L5], VJ [auth L5], VK [auth La], VL [auth S2], WC [auth L5], WD [auth L5], WE [auth L5], WF [auth L5], WG [auth L5], WH [auth L5], WI [auth L5], WJ [auth L5], WK [auth Le], WL [auth S2], XC [auth L5], XD [auth L5], XE [auth L5], XF [auth L5], XG [auth L5], XH [auth L5], XI [auth L5], XJ [auth L5], XK [auth Lg], XL [auth S2], YC [auth L5], YD [auth L5], YE [auth L5], YF [auth L5], YG [auth L5], YH [auth L5], YI [auth L5], YJ [auth L5], YL [auth S2], ZC [auth L5], ZD [auth L5], ZE [auth L5], ZF [auth L5], ZG [auth L5], ZH [auth L5], ZI [auth L5], ZJ [auth L5], ZK [auth Lj], ZL [auth S2]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.44 Å
• Aggregation State: CELL 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.20.1_4487:

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2025-04-09 
Deposition Author(s): Wei, Z., Yong, X.

---

Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2025-04-09
  Type: Initial release