8VIR

Crystal structure of the N-terminal domain of fatty acid kinase A (FakA) from Staphylococcus aureus (Apo)

PDB DOI: https://doi.org/10.2210/pdb8VIR/pdb

Classification: LIGASE
Organism(s): Staphylococcus aureus subsp. aureus NCTC 8325
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2024-01-05 Released: 2024-11-06
Deposition Author(s): Lovell, S., Kashipathy, M.M., Battaile, K.P., Bose, J.L.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free: 0.220
R-Value Work: 0.174
R-Value Observed: 0.176

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Molecular insights into the structure and function of the Staphylococcus aureus fatty acid kinase

Myers, M.J., Xu, Z., Ryan, B.J., DeMars, Z.R., Ridder, M.J., Johnson, D.K., Krute, C.N., Flynn, T.S., Kashipathy, M.M., Battaile, K.P., Schnicker, N., Lovell, S., Freudenthal, B.D., Bose, J.L.

(2024) J Biol Chem

DOI: https://doi.org/10.1016/j.jbc.2024.107920

Macromolecule Content

Total Structure Weight: 24.82 kDa
Atom Count: 1,611
Modelled Residue Count: 211
Deposited Residue Count: 232
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
FATTY ACID KINASE A	A	232	Staphylococcus aureus subsp. aureus NCTC 8325	Mutation(s): 0 Gene Names: SAOUHSC_01193
UniProt
Find proteins for Q2FZ58 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore Q2FZ58 Go to UniProtKB: Q2FZ58
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q2FZ58
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free: 0.220
R-Value Work: 0.174
R-Value Observed: 0.176
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 42.048	α = 90
b = 47.538	β = 90
c = 93.232	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
Aimless	data scaling
XDS	data reduction
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-11-06

Deposition Author(s):

Kashipathy, M.M.

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	P30 GM110761

Revision History (Full details and data files)

Version 1.0: 2024-11-06
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.