8WK3 | pdb_00008wk3

Cryo-EM structure of the proximal rod-export apparatus and FlgF within the motor-hook complex in the CW state


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: in silico
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural basis of the bacterial flagellar motor rotational switching.

Tan, J.Zhang, L.Zhou, X.Han, S.Zhou, Y.Zhu, Y.

(2024) Cell Res 34: 788-801

  • DOI: https://doi.org/10.1038/s41422-024-01017-z
  • Primary Citation of Related Structures:  
    8WHT, 8WIW, 8WJR, 8WK3, 8WK4, 8WKI, 8WKK, 8WKQ, 8WL2, 8WLE, 8WLH, 8WLI, 8WLN, 8WLP, 8WLQ, 8WLT, 8WO5, 8WOE, 8XP0, 8XP1, 8YJT

  • PubMed Abstract: 

    The bacterial flagellar motor is a huge bidirectional rotary nanomachine that drives rotation of the flagellum for bacterial motility. The cytoplasmic C ring of the flagellar motor functions as the switch complex for the rotational direction switching from counterclockwise to clockwise. However, the structural basis of the rotational switching and how the C ring is assembled have long remained elusive. Here, we present two high-resolution cryo-electron microscopy structures of the C ring-containing flagellar basal body-hook complex from Salmonella Typhimurium, which are in the default counterclockwise state and in a constitutively active CheY mutant-induced clockwise state, respectively. In both complexes, the C ring consists of four subrings, but is in two different conformations. The CheY proteins are bound into an open groove between two adjacent protomers on the surface of the middle subring of the C ring and interact with the FliG and FliM subunits. The binding of the CheY protein induces a significant upward shift of the C ring towards the MS ring and inward movements of its protomers towards the motor center, which eventually remodels the structures of the FliG subunits and reverses the orientations and surface electrostatic potential of the α torque helices to trigger the counterclockwise-to-clockwise rotational switching. The conformational changes of the FliG subunits reveal that the stator units on the motor require a relocation process in the inner membrane during the rotational switching. This study provides unprecedented molecular insights into the rotational switching mechanism and a detailed overall structural view of the bacterial flagellar motors.


  • Organizational Affiliation
    • Department of Gastroenterology of the Second Affiliated Hospital, School of Medicine and College of Animal Sciences, Life Sciences Institute, Zhejiang University, Hangzhou, Zhejiang, China.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar hook-basal body complex protein FliE104Salmonella enterica subsp. enterica serovar Typhimurium str. LT2Mutation(s): 0 
UniProt
Find proteins for P26462 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
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UniProt GroupP26462
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar basal body rod protein FlgBG [auth Q],
H [auth R],
I [auth S],
J [auth T],
K [auth U]
138Salmonella enterica subsp. enterica serovar Typhimurium str. LT2Mutation(s): 0 
UniProt
Find proteins for P16437 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar biosynthetic protein FliRL [auth E]264Salmonella enterica subsp. enterica serovar Typhimurium str. LT2Mutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for P54702 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar biosynthetic protein FliPAA [auth H],
EA [auth G],
GA [auth F],
M [auth I],
MA [auth J]
245Salmonella enterica subsp. enterica serovar Typhimurium str. LT2Mutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for P54700 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar biosynthetic protein FliQBA [auth A],
CA [auth B],
N [auth C],
OA [auth D]
89Salmonella enterica subsp. enterica serovar Typhimurium str. LT2Mutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for P0A1L5 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar M-ring protein560Salmonella enterica subsp. enterica serovar Typhimurium str. LT2Mutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for P15928 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar basal-body rod protein FlgC134Salmonella enterica subsp. enterica serovar Typhimurium str. LT2Mutation(s): 0 
UniProt
Find proteins for P0A1I7 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar basal-body rod protein FlgFU [auth m],
V [auth n],
W [auth o],
X [auth p],
Y [auth q]
251Salmonella enterica subsp. enterica serovar Typhimurium str. LT2Mutation(s): 0 
UniProt
Find proteins for P16323 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
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UniProt GroupP16323
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1_4487:
RECONSTRUCTIONcryoSPARC4.1.1

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China81925024
National Natural Science Foundation of China (NSFC)ChinaU23A20163
Ministry of Science and Technology (MoST, China)China2017YFA0503900

Revision History  (Full details and data files)

  • Version 1.0: 2024-09-04
    Type: Initial release
  • Version 1.1: 2025-03-26
    Changes: Data collection, Database references, Structure summary