9A0Z | pdb_00009a0z

Modeling of the interaction between doublecortin and microtubule, NDCs fixed at diagonal (#1) orientation

Integrative structure models are generated using different types of input information, including varied experimental data, physical principles, statistical preferences, and other prior information.


Integrative Structure Snapshot

  • Multi-Scale: Yes 
  • Multi-State: No 
  • Ordered-State: No 
  • Deposited Models: 1 
  • Representative Model: 1 

This is version 1.0 of the entry. See complete history


Literature

Doublecortin engages the microtubule lattice through a cooperative binding mode involving its C-terminal domain

Rafiei ALee LCrowder ASaltzberg DSali ABrouhard GSchreimer DC

(2022) Elife 11: e66975

  • DOI: https://doi.org/10.7554/eLife.66975
  • Primary Citation of Related Structures:  
    9A0Z, 9A10, 9A11, 9A12

  • PubMed Abstract: 

    Doublecortin (DCX) is a microtubule (MT)-associated protein that regulates MT structure and function during neuronal development and mutations in DCX lead to a spectrum of neurological disorders. The structural properties of MT-bound DCX that explain these disorders are incompletely determined. Here, we describe the molecular architecture of the DCX-MT complex through an integrative modeling approach that combines data from X-ray crystallography, cryo-electron microscopy, and a high-fidelity chemical crosslinking method. We demonstrate that DCX interacts with MTs through its N-terminal domain and induces a lattice-dependent self-association involving the C-terminal structured domain and its disordered tail, in a conformation that favors an open, domain-swapped state. The networked state can accommodate multiple different attachment points on the MT lattice, all of which orient the C-terminal tails away from the lattice. As numerous disease mutations cluster in the C-terminus, and regulatory phosphorylations cluster in its tail, our study shows that lattice-driven self-assembly is an important property of DCX.


  • Organizational Affiliation
    • Department of Chemistry, University of Calgary, Calgary, Canada.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Doublecortin
A, B
365Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for O43602 (Homo sapiens)
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Go to UniProtKB:  O43602
PHAROS:  O43602
GTEx:  ENSG00000077279 
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UniProt GroupO43602
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Alpha-Tubulin
C, D, E, F, G
C, D, E, F, G, H, I, J, K
451Sus scrofaMutation(s): 0 
Gene Names: TUBA1B
EC: 3.6.5
UniProt
Find proteins for Q2XVP4 (Sus scrofa)
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UniProt GroupQ2XVP4
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Beta-Tubulin
L, M, N, O, P
L, M, N, O, P, Q, R, S, T
445Sus scrofaMutation(s): 0 
UniProt
Find proteins for P02554 (Sus scrofa)
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Go to UniProtKB:  P02554
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UniProt GroupP02554
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  • Reference Sequence
Experimental Data & Validation

Integrative Structure Snapshot

  • Multi-Scale: Yes 
  • Multi-State: No 
  • Ordered-State: No 
  • Deposited Models: 1 
  • Representative Model: 1 

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2022-05-13
    Type: Initial release