9CY3 | pdb_00009cy3

Outward-facing Atorvastatin-bound OATP1B1 with sybody Sb5


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Cyclosporine A sterically inhibits statin transport by solute carrier OATP1B1.

Sung, M.W.Hu, K.Hurlimann, L.M.Lees, J.A.Fennell, K.F.West, M.A.Costales, C.Rodrigues, A.D.Zimmermann, I.Dawson, R.J.P.Liu, S.Han, S.

(2025) J Biological Chem 301: 108484-108484

  • DOI: https://doi.org/10.1016/j.jbc.2025.108484
  • Primary Citation of Related Structures:  
    9CY1, 9CY3, 9CY4

  • PubMed Abstract: 

    Members of the Organic Anion Transporter Polypeptides (OATP) are integral membrane proteins responsible for facilitating the transport of organic anions across the cell membrane. OATP1B1 (SLCO1B1), the prototypic OATP family member, is the most abundant uptake transporter in the liver and key mediator of the hepatic uptake and clearance of numerous endogenous and xenobiotic compounds. It serves as a locus of important drug-drug interactions, such as those between statins and cyclosporine A, and carries the potential to enable liver-targeting therapeutics. In this study, we report cryo-EM structures of OATP1B1 and its complexes with one of its statin substrates, atorvastatin, and an inhibitor, cyclosporine A. This structural analysis has yielded insights into the mechanisms underlying OATP1B1-mediated transport of statins and the inhibitory effect of cyclosporine A. These findings contribute to a better understanding of the molecular processes involved in drug transport and offer potential avenues for the development of targeted medications for liver-related conditions.


  • Organizational Affiliation
    • Discovery Sciences, Discovery & Early Development, Pfizer Inc., Groton, CT, 06340, USA.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Solute carrier organic anion transporter family member 1B1717Homo sapiensMutation(s): 0 
Gene Names: SLCO1B1LST1OATP1B1OATP2OATPCSLC21A6
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y6L6 (Homo sapiens)
Explore Q9Y6L6 
Go to UniProtKB:  Q9Y6L6
PHAROS:  Q9Y6L6
GTEx:  ENSG00000134538 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9Y6L6
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Sybody 5144synthetic constructMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
117 (Subject of Investigation/LOI)
Query on 117

Download Ideal Coordinates CCD File 
C [auth A]7-[2-(4-FLUORO-PHENYL)-5-ISOPROPYL-3-PHENYL-4-PHENYLCARBAMOYL-PYRROL-1-YL]- 3,5-DIHYDROXY-HEPTANOIC ACID
C33 H35 F N2 O5
XUKUURHRXDUEBC-KAYWLYCHSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other privateUnited States--

Revision History  (Full details and data files)

  • Version 1.0: 2025-04-16
    Type: Initial release
  • Version 1.1: 2025-04-23
    Changes: Data collection, Database references
  • Version 1.2: 2025-05-14
    Changes: Data collection, Database references