9F8T | pdb_00009f8t

Clathrin terminal domain complexed with C-terminus of AAK1L

• PDB DOI: https://doi.org/10.2210/pdb9F8T/pdb

• Classification: ENDOCYTOSIS
• Organism(s): Bos taurus, Homo sapiens
• Expression System: Escherichia coli DH5[alpha]
• Mutation(s): No 


• Deposited: 2024-05-07 Released: 2025-05-21 
• Deposition Author(s): Wrobel, A.G., Owen, D.J.
• Funding Organization(s): Wellcome Trust

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.71 Å
• R-Value Free: 
  0.209 (Depositor), 0.218 (DCC) 
• R-Value Work: 
  0.172 (Depositor), 0.181 (DCC) 

Starting Model: experimental

Literature

Clathrin terminal domain complexed with C-terminus of AAK1L

Wrobel, A.G., Owen, D.J., Kadlecova, Z.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 3-mer - A2B1 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 3-mer - A1B1C1 Local Symmetry: Cyclic - C2  (Explore in 3D)
Local Stoichiometry: Homo 2-mer - A2 

Local Symmetry: Cyclic - C2  (Explore in 3D)
Local Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 41.83 kDa 
• Atom Count: 3,368 
• Modeled Residue Count: 375 
• Deposited Residue Count: 375 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Clathrin heavy chain 1	A	363	Bos taurus	Mutation(s): 0  Gene Names: CLTC
UniProt
Find proteins for P49951 (Bos taurus) Explore P49951  Go to UniProtKB:  P49951

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
AP2-associated protein kinase 1	B [auth D], C [auth E]	6	Homo sapiens	Mutation(s): 0  EC: 2.7.11.1
UniProt & NIH Common Fund Data Resources
Find proteins for Q2M2I8 (Homo sapiens) Explore Q2M2I8  Go to UniProtKB:  Q2M2I8
PHAROS:  Q2M2I8 GTEx:  ENSG00000115977

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.71 Å
• R-Value Free:  0.209 (Depositor), 0.218 (DCC) 
• R-Value Work:  0.172 (Depositor), 0.181 (DCC) 

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 107.539	α = 90
b = 130.86	β = 90
c = 77.05	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2025-05-21 
Deposition Author(s): Wrobel, A.G., Owen, D.J.

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Funding Organization	Location	Grant Number
Wellcome Trust	United Kingdom	097040/Z/11/Z
Wellcome Trust	United Kingdom	090909/Z/09/Z

Revision History  

• Version 1.0: 2025-05-21
  Type: Initial release